Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value SEQ42930 327 1e-84 SEQ29989 89.7 6e-13 >SEQ42930 Length=93363 Score = 327 bits (362), Expect = 1e-84 Identities = 670/988 (68%), Gaps = 17/988 (2%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||||||| |||| |||||| ||| ||||| | ||||| || || || Sbjct 31629 CAGATGCTCATCCAGACACTGGATGGCGAAGGGGTCGACGTCCACATCGAACTTGTTGGC 31570 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 || || ||||| || | || ||||| || ||| || | ||||| ||||| || Sbjct 31569 AAAAAGGTGGTGT---TTGCGCAGCATCCATCTCAAGTCACCCGCTCCGAAGACGCACAC 31513 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | ||| || || |||| || ||||| |||| ||| | | ||||| ||||| Sbjct 31512 GGAGCGCACGTGGACTCCACTGCACGGGGGGTAAGGAGCGCCTCTGGAAACGTCGCCTTC 31453 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 | ||||||||||||| |||||||| || | || | |||||| || ||| || || || Sbjct 31452 GAAGTACTGCCACTTGACAAACCTCGCGACAGCATTCATGTCAGACAAGTCATACTTATA 31393 Query 160292 CATC-AGGGGAACG-GCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGT 160349 | ||||| || | ||| || || | || || ||||| | |||||||| ||| Sbjct 31392 GCTGGAGGGG--CGAGAACCAGGGACTTCAGGGATCCGCTGGATAGTGGCCCAAAGGAAC 31335 Query 160350 TCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT--TAACCTGTCCC 160407 ||||| |||||||| ||||||| | ||||||||| |||| | ||| | | | | | Sbjct 31334 TCGTCTGGGCTGTATGTGTCCTGCGCCCATTCCATAAACTTTTGGATATTTTCATTTTCT 31275 Query 160408 GCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCG 160467 || || || || || || | || |||||||| |||||||| || || | | Sbjct 31274 --AGCACATGGCCTACATATTCCCTACTGACCACAAAGTAGGCGCTGCCTGAAAAAAGAG 31217 Query 160468 G---TATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCA 160524 | | || || |||| ||| |||| | || ||||||| || | || | | Sbjct 31216 GAGTTTTGAGTGGAGGCTGCGA---TTTGGCTACCCCAGTGTTAGTCAGCTTCCCATCAA 31160 Query 160525 CCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTA 160584 | | | ||| ||||| ||||| || | ||||| || ||||| || || || | Sbjct 31159 CAATAGTGTGCCGCTTTTTCCATCTTTCTTCCTTGTTGGGAGGCATCTTCTCAGTTTCCA 31100 Query 160585 GACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCG 160644 | |||| |||| || || || |||| | |||| || || ||||| || || | | Sbjct 31099 GGTTGTTTTCACCTATGAATGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAG 31040 Query 160645 GAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGT 160704 | || || |||| || | || |||| ||||||||| || || ||| || |||| Sbjct 31039 GGAAATCCATACCACAAAGATTAATCAAGTACTTCCAGTTTGCATTCATTCTGTAGAGGT 30980 Query 160705 CCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTA 160764 || ||||||| || | || ||||| || || |||||||| || || || || ||||| | Sbjct 30979 CCTTCATGCAGTTGAGGTCAGCCTGAACCCGACTCCAGGAGGCATAAACAACATTCTCCA 30920 Query 160765 GTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGA 160824 | |||||||||||||| |||||||| || || | || |||||||| || || | Sbjct 30919 ACTGGCTGGCCACAAAGACATTATCGAAGCAGGATGCAATGCCCACCACGGCGGCTAAAA 30860 Query 160825 ACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGG 160884 | | || || || |||||| || | ||| || | ||||| ||| |||||||| Sbjct 30859 AGGATTCCTCTGCTTTCTTGTCCACATGGATGCAGTAGAAATTCTGGGGCATGTAGATGG 30800 Query 160885 CCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCG 160944 |||| || | ||| || | ||| || ||||||||||| | ||| || || || || || | Sbjct 30799 CCCTCAGGAGCCTGTCAAGCATTTCAATCTTATGATGAACCACTATGGAATATGCAATTG 30740 Query 160945 GAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAAT 161004 |||| | | ||| || ||| |||| | | | || || || || |||| ||| Sbjct 30739 GAAAGCCTGCCTCTTCTTTACTAAGGGGCTCCACAATATATTTGCGAGTTCTGATGAAAG 30680 Query 161005 AATCACAATCCCGCGTCATGTTGATATA 161032 | | || || |||||||||| ||||| Sbjct 30679 AGGCGCAGTCATGCGTCATGTTTATATA 30652 >SEQ29989 Length=139411 Score = 89.7 bits (98), Expect = 6e-13 Identities = 193/288 (67%), Gaps = 3/288 (1%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || || || || || |||||| || |||||||||| |||||| || Sbjct 23627 GTCAAACTTGTTGGCCAAGAGGTGTTG---GTTCTGAAGTATCCAGTGCAGGTCTCCAGA 23683 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | | ||||| | || ||||| || ||| || | ||| | || || Sbjct 23684 CCCATAAATACAGACAGCCCGCTGGTGCATCCCTGAGCACGGTGTGTAAGGTGCCCCGGC 23743 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | | | ||| || |||| || ||||||||| | ||| || || | | |||||| || Sbjct 23744 CTCGATGTCTCCCTCGTGGTCCTGCCACTTGGTTAGCCTCGCGATAGACCTCATGTCTGA 23803 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 | ||| | ||| || |||| | | || || | | || |||||| ||||| Sbjct 23804 GAGGTCAAACTTGCGGTGCAAGGGAGCCGATCCAGGCATCCATGGGGCACGCTGGAGGGT 23863 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 |||||| ||||| || |||||||| || ||||| || |||||| || Sbjct 23864 GGCCCAAAGGTGCTCATCGGGGCTATAGGTGTCTTTTACCCATTCGAT 23911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576523456052520