Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value SEQ13217 113 8e-20 SEQ31259 111 3e-19 SEQ28820 107 3e-18 SEQ23137 104 4e-17 SEQ57164 98.7 2e-15 SEQ37766 95.1 2e-14 >SEQ13217 Length=170878 Score = 113 bits (124), Expect = 8e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || || | ||| || Sbjct 167096 ACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCTATCTTCC 167155 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || ||||| ||| | || | |||||| ||||||||||| |||||||| |||||||| Sbjct 167156 AGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCTTGG 167215 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| ||||| || || || ||||| || || || || || || Sbjct 167216 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACCTCAAGCGTGATGGTCTTC 167275 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || ||||| || ||||| || Sbjct 167276 CCCGTAAGGGTCTTCACAAAAATCTGCATCTT 167307 >SEQ31259 Length=129631 Score = 111 bits (122), Expect = 3e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCT-CTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 || ||||| | |||| || |||| ||| | || ||||| || || || | ||| || Sbjct 129238 ACAAGATGAAGGGTAGACTGCTTTTGAA-TGTTGTAGTCAGACAAAGTACGGCCATCTTC 129296 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 | || ||||| ||||| || | |||||| ||||||||||| |||||||| |||||||| Sbjct 129297 CAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCTTG 129356 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 || |||| |||| |||| |||| || || | ||||| || || || || || || Sbjct 129357 GATCTTGGCCTTTACATTTTCTGTAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTT 129416 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||| || || || ||||| || ||||| Sbjct 129417 CTCTGTAAGGGTCTTCACAAAAATCTGCAT 129446 >SEQ28820 Length=113666 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || ||||| || || || | ||| || Sbjct 62269 ACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 62328 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || ||||| ||||| || | |||||| ||||||||||| |||||||| ||||| || Sbjct 62329 AGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 62388 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| ||||| || || | ||||| || || || || || || Sbjct 62389 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTC 62448 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || | || || || ||||| || ||||| || Sbjct 62449 CCCATCAGGGTCTTCACAAAAATCTGCATCTT 62480 >SEQ23137 Length=3047 Score = 104 bits (114), Expect = 4e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || ||||| || || || ||| || Sbjct 38 ACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAGGGCCATCTTCC 97 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || ||||| ||| | || | |||||| ||||||||||| |||||||| ||||| || Sbjct 98 AGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 157 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| ||||| || || | ||||| || || || || || || Sbjct 158 ATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGTCTTC 217 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || ||||| || ||||| || Sbjct 218 CCCGTCAGGGTCTTCACAAAAATCTGCATCTT 249 >SEQ57164 Length=103104 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || || | ||| || Sbjct 21508 ACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACAGCTATCTTCC 21449 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || ||||| ||| | || | |||||| ||||||||||| |||||||| ||||| || Sbjct 21448 AGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 21389 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| ||||| || || | ||| | | || || || || || Sbjct 21388 ATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAGCCTTGAGCGTGATGGTCTTC 21329 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || || || ||||| || ||||| || Sbjct 21328 CCTGTAAGGGTCTTCACAAAAATCTGCATCTT 21297 >SEQ37766 Length=173039 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/235 (69%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || || ||||| | |||| ||| || ||| || ||||| || Sbjct 157071 ACCACCACGGAGTCTTAGCACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 157130 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATC----TCTGTTGATCAG 193248 || || ||| || | || ||||| ||||| || | || |||| ||||||| Sbjct 157131 CAAAGTATGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCAGTCTCTGCTGATCAG 157190 Query 193249 GAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACT 193308 |||| |||||||| ||||| || || |||| |||| |||| ||||| || || | | Sbjct 157191 GAGGAATTCCTTCCTTATCCTGGATCTTGG-CTTTACATTTTCTATAGTGTCCGAGGGTT 157249 Query 193309 CAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||| || || || || || || || || || || || ||||| || ||||| || Sbjct 157250 CAACCTCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 157304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898570012814640