Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1037 113 9e-20 SEQ31259 107 4e-18 SEQ28820 107 4e-18 SEQ35906 98.7 2e-15 SEQ37766 95.1 2e-14 SEQ11338 95.1 2e-14 SEQ23565 93.3 8e-14 SEQ15017 86.0 1e-11 >seq1037 Length=126922 Score = 113 bits (124), Expect = 9e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 192340 GTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACC 192398 |||| ||| ||| || || || || ||||| || || || |||| |||| || || || Sbjct 82607 GTAGACTCCTTTTGA-ATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTTCC 82549 Query 192399 AGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 192458 ||||||||| | |||||| |||||||| | ||||| ||| ||||| || || || || Sbjct 82548 AGCAAAGATCAGTCTCTGCTGATCAGGAGATATTCTTTCCTTATCCTGGATCTTGGCCTT 82489 Query 192459 TACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 192518 |||||| ||||| || || ||||| || || || || ||||| || || || | || Sbjct 82488 TACATTTTCTATAGTGTCCGAGGATTCAACCTCAAGCGTGATGGTCTTCCCCGTAAGGGT 82429 Query 192519 TTTAATAAATATCTGCATTTT 192539 || | ||| |||||||| || Sbjct 82428 CTTCACAAAAATCTGCATCTT 82408 >SEQ31259 Length=129631 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 192340 GTAGCCT-CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACC 192398 |||| || |||| || || || || ||||| || || || |||| |||| || || || Sbjct 129250 GTAGACTGCTTTTGA-ATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTTCC 129308 Query 192399 AGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 192458 ||||||||| | |||||| |||||||| || |||||||| |||||||| || || || Sbjct 129309 AGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCTTGGATCTTGGCCTT 129368 Query 192459 TACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 192518 |||||| | ||| || || | ||| || || || || ||||| || | || | || Sbjct 129369 TACATTTTCTGTAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCTCTGTAAGGGT 129428 Query 192519 TTTAATAAATATCTGCAT 192536 || | ||| |||||||| Sbjct 129429 CTTCACAAAAATCTGCAT 129446 >SEQ28820 Length=113666 Score = 107 bits (118), Expect = 4e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 192340 GTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACC 192398 |||| ||| ||| || || || || ||||| || || || |||| |||| || || || Sbjct 62281 GTAGACTCCTTTTGA-ATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTTCC 62339 Query 192399 AGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 192458 ||||||||| | |||||| |||||||| || |||||||| ||||| || || || || Sbjct 62340 AGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTT 62399 Query 192459 TACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 192518 |||||| ||||| || || | ||| || || || || ||||| || || | | || Sbjct 62400 TACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCATCAGGGT 62459 Query 192519 TTTAATAAATATCTGCATTTT 192539 || | ||| |||||||| || Sbjct 62460 CTTCACAAAAATCTGCATCTT 62480 >SEQ35906 Length=62346 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| || | || |||| |||| || || |||||||||| Sbjct 33437 CTTTTGA-ATGTTGTAGTCAGACAAAGCACGGCCATCTTCCAGCTGCTTCCCAGCAAAGA 33379 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | |||||| ||||||| || |||||||| ||||| || || || |||||||| Sbjct 33378 TCAGTCTCTGCCGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTT 33319 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||| | || || | ||| || || || || ||||| || || || | || || | || Sbjct 33318 CTATTGTGTCCGAGGGTTCAACCTCGAGTGTGATGGTCTTCCCCGTAAGGGTCTTCACAA 33259 Query 192527 ATATCTGCATTTTA 192540 | |||||||| ||| Sbjct 33258 AAATCTGCATCTTA 33245 >SEQ37766 Length=173039 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/236 (70%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | || | || || | ||| | |||| ||| ||| || || || || |||| Sbjct 157071 ACCACCACGGAGTCTTAGCACAAGATGAAGGGTAGACTCCTTTTGA-ATGTTGTAGTCAG 157129 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA----TTAATCTCTGTTGATCA 192423 | || || | |||| |||| || || |||||||||| | | |||||| |||||| Sbjct 157130 ACAAAGTATGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCAGTCTCTGCTGATCA 157189 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || |||||||| ||||| || || || |||||||| ||||| || || | | Sbjct 157190 GGAGGAATTCCTTCCTTATCCTGGATCTT-GGCTTTACATTTTCTATAGTGTCCGAGGGT 157248 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || || ||||| || || || | || || | ||| |||||||| || Sbjct 157249 TCAACCTCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 157304 >SEQ11338 Length=128349 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || ||||| || | || |||| |||| || || ||||||||| | | |||| Sbjct 64117 ATGTTGTAGTCAGACAAAGAACGGCCATCTTCCAGCTGCTTCCCAGCAAAGGTCAGTCTC 64058 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||| |||| || |||||||| ||||| || || | | ||| |||| ||||| Sbjct 64057 TGCTGAGCAGGAGGAATTCCTTCCTTATCCTGGATCTCAGCCTTTCCATTTTCTATAGTG 63998 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| || || || ||||||| || || || | || || | ||| |||||| Sbjct 63997 TCCGAGGGTTCAACCTCAAGCATAATGGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGC 63938 Query 192535 ATTTT 192539 ||||| Sbjct 63937 ATTTT 63933 >SEQ23565 Length=11847 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | || | ||| | |||||| ||| || || || Sbjct 9730 ATCCCACCTCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCG 9789 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || || |||||||| | ||||| || ||||| Sbjct 9790 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGG 9849 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || || ||||| || | || | || Sbjct 9850 GGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCG 9909 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||| || ||||||||||||||||| ||||| | || ||||||||| Sbjct 9910 ACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 9960 >SEQ15017 Length=62173 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| || || ||||| ||||| || || ||| |||| |||| ||||||||||||| | Sbjct 45897 TCTTTTGA-ATGTTATAGTCAGACAAAGTACGTCCATCTTCCAGCTGTTTACCAGCAAGG 45839 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 || | ||||| ||||||| || |||| ||| ||||| || || | | |||||||| Sbjct 45838 ATGAGCCTCTGCCGATCAGGAGGAATTCTTTCCTTATCCTGGATCATGTCCTTTACATT 45780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983263703571450