Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value SEQ23565 91.5 3e-13 SEQ11338 87.8 3e-12 >SEQ23565 Length=11847 Score = 91.5 bits (100), Expect = 3e-13 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| || || | || | || | ||| | |||||| || || || || Sbjct 9730 ATCCCACCTCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCG 9789 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || |||| || || || ||||| || | ||||| |||||||| Sbjct 9790 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGG 9849 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || || || ||||| || || || | || Sbjct 9850 GGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCG 9909 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAA 172079 || ||||| || ||||||||||||||||| ||||| | ||| ||||||||| | | ||| Sbjct 9910 ACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAAGATCTGCATTGTCTGTTAA 9969 Query 172080 AAA 172082 ||| Sbjct 9970 AAA 9972 >SEQ11338 Length=128349 Score = 87.8 bits (96), Expect = 3e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || || ||||| || | || |||| || || |||||||| | | ||| Sbjct 64118 AATGTTGTAGTCAGACAAAGAACGGCCATCTTCCAGCTGCTTCCCAGCAAAGGTCAGTCT 64059 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || |||| || |||||||| ||||| || || | | ||| |||| |||||| Sbjct 64058 CTGCTGAGCAGGAGGAATTCCTTCCTTATCCTGGATCTCAGCCTTTCCATTTTCTATAGT 63999 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || | ||| || || || ||||||| || || || | || || | || ||||| Sbjct 63998 GTCCGAGGGTTCAACCTCAAGCATAATGGTCTTCCCTGTAAGGGTCTTCACAAAAATCTG 63939 Query 172067 CATTTT 172072 |||||| Sbjct 63938 CATTTT 63933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904045005636600