Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value SEQ84242 152 2e-32 >SEQ84242 Length=328 Score = 152 bits (168), Expect = 2e-32 Identities = 219/307 (71%), Gaps = 4/307 (1%) Strand=Plus/Minus Query 40215 ACGTACTGGATGACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCA 40272 ||||||||||| |||||||| || || || | || |||||||||||||| || |||| Sbjct 314 ACGTACTGGATCACCTCGCCGCGGCGGTCCTGGCA--GAAGTCGATGTCGAAGTCCGGCA 257 Query 40273 TGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGA 40332 | || ||||| || || || |||||||||||||| | | | | || |||||||| Sbjct 256 TCGAGACGCGTTCCGGATTGAGGAAGCGCTCGAACAGCAACGCAAAGCGCATCGGGTCGA 197 Query 40333 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGC 40392 |||||||||| || || ||||||||||||| || || | ||||| || || || | Sbjct 196 GGTCGGTGATGGTCAGCACCCAGGCGACCAGCGAGCCCGCACCCGAGCCGCGGCCCGGTC 137 Query 40393 CGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACG 40452 ||||| | || | | |||||||||| ||||||||||| |||| || ||||| Sbjct 136 CGACCGGAATGCCCTGCGCCTTCGCCCATTTGATGAAGTCCGACACGATCAGAAAGTAGC 77 Query 40453 ACGGGAACCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTCGT 40512 || | | ||| || |||| | ||||| |||| | ||| |||||| || || | Sbjct 76 CCGCGTATTTCATGCGGGTGATGACGTCGAGCTCGAAGGCAAGCCGCTTGCTGTAATCCT 17 Query 40513 AGTCCGT 40519 ||||| Sbjct 16 CCTCCGT 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163137781569186