Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value SEQ84242 93.3 4e-14 >SEQ84242 Length=328 Score = 93.3 bits (102), Expect = 4e-14 Identities = 186/275 (68%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 105020 CATCACCAGCAAGAACTTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGC 105079 ||||||| ||| ||| | ||| || ||||| |||| | |||| || ||| ||||| Sbjct 54 CATCACCCGCATGAAATACGCGGGCTACTTTCTGATCGTGTCGGACTTCATCAAATGGGC 113 Query 105080 TAAGGACC---GCATGCTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTC 105136 |||| | |||| | ||||| || ||||| || |||| | |||||||| ||| | Sbjct 114 GAAGGCGCAGGGCATTCCGGTCGGACCGGGCCGCGGCTCGGGTGCGGGCTCGCTGGTCGC 173 Query 105137 GTACCTGATGGACATCACCGAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTT 105196 | || || ||||||||| ||||||||||| | | || |||||||||| || Sbjct 174 CTGGGTGCTGACCATCACCGACCTCGACCCGATGCGCTTTGCGTTGCTGTTCGAGCGCTT 233 Query 105197 CATCTCGCCGGAGCGGAAGAACTTCCCCGACATCGATCTCGACTTCCCGCAGAAGCGTCG 105256 | || ||||| || | || ||| |||| |||||||| ||| | || || Sbjct 234 CCTCAATCCGGAACGCGTCTCGATGCCGGACTTCGACATCGACTTCTGCCAGGACCGCCG 293 Query 105257 CGGCGAGGTCGTCGACTACATCGCCGACCGCTACG 105291 ||||||||| || | ||| | || ||||||| Sbjct 294 CGGCGAGGTGATCCAGTACGTGCAGGAGCGCTACG 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455523877387160