Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value SEQ35906 131 2e-25 SEQ28820 131 2e-25 SEQ23137 127 2e-24 SEQ31259 125 6e-24 SEQ13217 125 6e-24 SEQ37766 123 2e-23 seq1037 122 8e-23 SEQ23565 107 2e-18 SEQ43829 98.7 9e-16 SEQ50471 95.1 1e-14 SEQ25611 91.5 1e-13 >SEQ35906 Length=62346 Score = 131 bits (144), Expect = 2e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 24700 TACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGC 24759 || ||||||||| ||| | || || || || || || || || || ||||| || ||| | Sbjct 33245 TAAGATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACACTCGAGGTTGAACC 33304 Query 24760 CACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 | | |||||| |||||| ||||| |||||||| || || |||||||| ||||| || Sbjct 33305 CTCGGACACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 33364 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 || || | |||||||||| ||||| |||||||| ||| | |||| || || Sbjct 33365 TCGGCAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTGCTTTGTCTGACTA 33424 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||||||||| || || || || | |||||| || Sbjct 33425 CAACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGA 33464 >SEQ28820 Length=113666 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || | || || || || |||||||| || ||| || | Sbjct 62478 GATGCAGATTTTTGTGAAGACCCTGATGGGGAAGACCATCACGCTCGAGGTTGAACCCTC 62419 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 62418 GGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 62359 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | |||| || || || Sbjct 62358 GCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAA 62299 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||||||| || || || || | |||||| || Sbjct 62298 CATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGA 62262 >SEQ23137 Length=3047 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || || || || || || |||||||| || ||| || | Sbjct 247 GATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACGCTCGAGGTTGAACCCTC 188 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 187 AGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 128 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||| ||| || || |||||||| ||| | |||| || || || Sbjct 127 GCAGAGACTGATCTCTGCTGGAAAGCAGCTGGAAGATGGCCCTACTTTGTCTGACTACAA 68 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| || || || || | |||||| || | || || || Sbjct 67 CATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTCCGTGGTGG 20 >SEQ31259 Length=129631 Score = 125 bits (138), Expect = 6e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || || | || || || |||||||| || ||| || | Sbjct 129447 GATGCAGATTTTTGTGAAGACCCTTACAGAGAAGACCATCACGCTCGAGGTTGAACCCTC 129388 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| ||||| ||||| ||||||||||| || |||||||| ||||| ||||| Sbjct 129387 GGACACTACAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGATCA 129328 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | |||| || || || Sbjct 129327 GCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAA 129268 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||||| | || || || || | |||||| || Sbjct 129267 CATTCAAAAGCAGTCTACCCTTCATCTTGTGTTGAGA 129231 >SEQ13217 Length=170878 Score = 125 bits (138), Expect = 6e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || || || || || || ||||| || || ||| || | Sbjct 167305 GATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACGCTTGAGGTTGAATCCTC 167246 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||||| ||||| ||||||||||| || |||||||| ||||| ||||| Sbjct 167245 GGACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGATCA 167186 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||| ||| || || |||||||| ||| | | |||| || || || Sbjct 167185 GCAGAGACTGATCTCTGCTGGAAAGCAGCTGGAAGATAGCCGTACTTTGTCTGACTACAA 167126 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||| ||||| || || || || | |||||| || Sbjct 167125 CATTCAGAAGGAGTCCACCCTTCATCTTGTGTTGAGA 167089 >SEQ37766 Length=173039 Score = 123 bits (136), Expect = 2e-23 Identities = 160/214 (75%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || || || || || || |||||||| || ||| || | Sbjct 157302 GATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACGCTCGAGGTTGAACCCTC 157243 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||||| ||||| | || |||||| || || |||||||| ||||| ||||| Sbjct 157242 GGACACTATAGAAAATGTAAAGCCAA-GATCCAGGATAAGGAAGGAATTCCTCCTGATCA 157184 Query 24823 ACA---AC-GTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGAT 24877 || || | |||||||||| || || |||||||| ||| | | || | ||| || Sbjct 157183 GCAGAGACTGACTGATCTTTGCTGGAAAGCAGCTGGAAGATG-GCCATACTTTGTCTGAC 157125 Query 24878 TATAACATTCAAAAGGAATCGACACTACA-CTTG 24910 || |||||||||||||| || || || || |||| Sbjct 157124 TACAACATTCAAAAGGAGTCTACCCTTCATCTTG 157091 >seq1037 Length=126922 Score = 122 bits (134), Expect = 8e-23 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || || || || || || ||||| || || ||| || | Sbjct 82410 GATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACGCTTGAGGTTGAATCCTC 82469 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||||| ||||| |||||||| || || ||| ||||| |||| ||||| Sbjct 82470 GGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAAGAATATCTCCTGATCA 82529 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | |||| || || || Sbjct 82530 GCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAA 82589 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||||||||| || || || || |||| Sbjct 82590 CATTCAAAAGGAGTCTACCCTTCATCTTG 82618 >SEQ23565 Length=11847 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | ||||| |||| |||||||| || || || || || || || Sbjct 9962 ACAATGCAGATCTTCGTGAAAACCTTAACTGGTAAAACCATCACCCTAGAGGTCGAGCCC 9903 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||||||| ||||| ||||| || || || || Sbjct 9902 AGTGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGAC 9843 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||| || || |||||||| ||| | | | |||| || || Sbjct 9842 CAGCAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTAC 9783 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || || || || || ||| |||| Sbjct 9782 AACATCCAGAAAGAGTCCACTCTGCACCTGGT 9751 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || || || ||| Sbjct 9276 GATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 9217 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||| ||||| ||||| || || || || || Sbjct 9216 TGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 9157 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | | |||| || || || Sbjct 9156 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 9097 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || || || || |||||| |||| Sbjct 9096 CATCCAGAAAGAGTCCACTCTACACCTGGT 9067 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || || || ||| Sbjct 9504 GATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 9445 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||| ||||| ||||| || || || || || Sbjct 9444 TGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 9385 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | | |||| || || || Sbjct 9384 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 9325 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || || || || || ||| |||| Sbjct 9324 CATCCAGAAAGAGTCCACTCTGCACCTGGT 9295 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || || || ||| Sbjct 9732 GATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 9673 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||| ||||| ||||| || || || || || Sbjct 9672 TGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 9613 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | | |||| || || || Sbjct 9612 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 9553 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || || || || || ||| |||| Sbjct 9552 CATCCAGAAAGAGTCCACTCTGCACCTGGT 9523 >SEQ43829 Length=74093 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || || || | || || || ||| Sbjct 42047 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 42106 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 42107 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 42166 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | |||| || || ||| Sbjct 42167 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 42226 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| ||||| || ||| |||| Sbjct 42227 ATCCAGAAGGAGTCGACCCTGCACCTGGT 42255 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||| || || || || | || || || ||| Sbjct 42275 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCCAGT 42334 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 42335 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 42394 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | |||| || || ||| Sbjct 42395 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 42454 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| ||||| || ||| |||| Sbjct 42455 ATCCAGAAGGAGTCGACCCTGCACCTGGT 42483 >SEQ50471 Length=54286 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGC-TAACCGGTAAAA--CTATTACGCTCGAAGTAGAAGC 24759 ||||||||| ||| | || || | | | |||| || || | |||||||| || ||| | Sbjct 42079 GATGCAGATTTTTGTGAAGACCCGTTA--GGTAGAAGACTGTCACGCTCGAGGTTGAACC 42136 Query 24760 CACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 | | ||||| |||||| ||||| ||||| | || || |||||||| ||||| || Sbjct 42137 CTCGGACACTATAGAAAATGTAAAGGCCGAGATCGAGGATAAGGAAGGAATTCCTCCTGA 42196 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 ||| | | |||||| ||| || || || ||||| ||| | | |||| || || Sbjct 42197 TCAGAAGAGACTGATCTCTGCTGGAAAGCACCTGGAAGATGGCCGTAC--TGTCTGACTA 42254 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || || || | |||||| || | || || || Sbjct 42255 CAACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTCCGTGGTGG 42305 >SEQ25611 Length=18984 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 24740 ATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGAC 24799 || || ||||| || ||| || | ||||| |||||| |||| |||||| | || Sbjct 14187 ATCACACTCGAGGTTGAACCCTCAGACACCATAGAAAACGTAATGGTTAAGATCAAGGAT 14128 Query 24800 AAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || |||||||| ||||| ||||| || | || | ||||| || || |||||||| || Sbjct 14127 AAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGTTTTTTGCTGGTAAGCAGCTGGAATAT 14068 Query 24860 TCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 | | | |||| || || |||||||||||||| || || || || | |||||| || Sbjct 14067 TGCCGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGA 14008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449355321551560