Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_022085.1 Length=76483 Score E Sequences producing significant alignments: (Bits) Value SEQ77540 107 9e-19 >SEQ77540 Length=249 Score = 107 bits (118), Expect = 9e-19 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 66730 AAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTG 66789 ||||| |||| |||| ||||||||| |||||| || ||||| || |||||||||||| Sbjct 235 AAGGAGCGCGACGAGGTGGTCGGCAACACCACCCGCGTCAAGGTGGTGAAGAACAAGCTG 176 Query 66790 GCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGA- 66848 || ||||| | | | ||||||| | || ||||||| |||||| |||| | || Sbjct 175 GCGCCGCCCTTCAAGCAGGTCGAGTTCGACATCATGTACGGCGAGGGCGTCTC-CAAGAT 117 Query 66849 GGTCGAACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTT 66908 || || |||||||||| | ||| | ||||| || ||||||| ||||||||||| Sbjct 116 GGGTGAGATCCTCGACCTCGGCGTCAAGGCCGGCCTCGTCGAGAAGTCCGGCGCCTGGTT 57 Query 66909 C 66909 | Sbjct 56 C 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244333320642068