Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value SEQ23565 141 6e-29 SEQ43829 140 2e-28 SEQ13217 107 1e-18 SEQ11330 96.9 2e-15 SEQ45421 93.3 3e-14 seq7114 89.7 3e-13 >SEQ23565 Length=11847 Score = 141 bits (156), Expect = 6e-29 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||| ||||| ||||| ||||| || ||| |||| |||| Sbjct 9064 AGGACCAGGTGTAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 9123 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || |||||||| | |||||||| | || | || |||||||| Sbjct 9124 TCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 9183 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || ||| ||||| || || || | ||| ||| |||||| || | ||| |||| Sbjct 9184 TGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGG 9241 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| |||||||||||||| Sbjct 9242 TCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9275 Score = 141 bits (156), Expect = 6e-29 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||| ||||| ||||| ||||| || ||| |||| |||| Sbjct 9292 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 9351 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || |||||||| | |||||||| | || | || |||||||| Sbjct 9352 TCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 9411 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || ||| ||||| || || || | ||| ||| |||||| || | ||| |||| Sbjct 9412 TGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGG 9469 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| |||||||||||||| Sbjct 9470 TCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9503 Score = 141 bits (156), Expect = 6e-29 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||| ||||| ||||| ||||| || ||| |||| |||| Sbjct 9520 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 9579 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || |||||||| | |||||||| | || | || |||||||| Sbjct 9580 TCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 9639 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || ||| ||||| || || || | ||| ||| |||||| || | ||| |||| Sbjct 9640 TGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGG 9697 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| |||||||||||||| Sbjct 9698 TCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9731 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||| ||||| ||||| ||||| || ||| |||| |||| Sbjct 9748 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 9807 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || |||||||| | |||||||| | || | || |||||||| Sbjct 9808 TCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 9867 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || ||| ||||| || || || | ||| ||| |||||| || | ||| |||| Sbjct 9868 TGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCTAGGGTGATGG 9925 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || || | ||| || || ||||||||||| Sbjct 9926 TTTTACCAGTTAAGGTTTTCACGAAGATCTGCAT 9959 >SEQ43829 Length=74093 Score = 140 bits (154), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||||||||| ||||| ||||| || Sbjct 42501 CCACCCCTCAGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 42442 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| ||||| |||||||| | |||||||| | || Sbjct 42441 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 42382 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || || || || || || || | ||| ||| ||||| Sbjct 42381 ATACCTTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCGA 42324 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || || |||||||| || || ||||||||| Sbjct 42323 CCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATG 42274 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||||||||| ||||| ||||| || Sbjct 42273 CCGCCCCTCAGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 42214 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| ||||| |||||||| | |||||||| | || Sbjct 42213 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 42154 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || || ||| | || | ||| ||| ||| || Sbjct 42153 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 42094 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || |||||||| || ||||| ||||| Sbjct 42093 TCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 42047 >SEQ13217 Length=170878 Score = 107 bits (118), Expect = 1e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| || || |||| |||| ||||||||||||||| ||||| || | | || | Sbjct 167090 CTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCTA 167149 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| |||||||| || ||||||||| ||||| || | || | || ||||| Sbjct 167150 TCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTA 167209 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||| | || || || || |||| || ||| Sbjct 167210 TCTTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACCTCAAGCGTGATG 167269 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAGTGGA 34986 ||||| ||||| |||||||| ||||| |||||||| | ||||| Sbjct 167270 GTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCTTGGTGGA 167313 >SEQ11330 Length=6390 Score = 96.9 bits (106), Expect = 2e-15 Identities = 130/179 (73%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861 ||||| || ||| | || |||| ||||| ||||| || ||||| ||||| | |||||| Sbjct 6124 TAGTCAGACAGGGTCCGGCCATCCTCCAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGG 6065 Query 34862 TCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCAT 34919 || | || | || |||| ||| | || || ||||| || || || | ||| Sbjct 6064 TCAGGTGGGATGCCTTCCTCGTCTTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCAC 6007 Query 34920 TGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||| || |||| || |||||||| ||||| |||||||| || |||||||||||| Sbjct 6006 TGGGCTCAACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 5948 >SEQ45421 Length=309261 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 34754 CCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGG 34813 || |||| |||| |||| | | | |||| || ||||| ||||| |||| || ||| Sbjct 257136 CCTCTCAGGCTCAC-ACCATGGGCAGGGTGGACTTTTTCTGGATGTTGAAGTCAGACAGG 257078 Query 34814 CTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACC 34873 ||| | |||| ||||| ||||| || ||| | ||||| | |||||||| | | | Sbjct 257077 GTGCACCCATCCTCCAGCTGCTTGCCAGCGGATATCAGCCTCTGCTGGTCAGGTGAGATG 257018 Query 34874 CCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACAT 34931 || |||||| | | || || |||| | || || || | | | ||| ||| || | Sbjct 257017 CCTTCCTTGGCTTGGATCTTGGCTTTGGC--ATTCTCCATGGTGTTACTGGGCTCAACCT 256960 Query 34932 CAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || || |||||||| ||||| |||||||| | |||||||||||||| Sbjct 256959 CACAAGTGATGGTCTTGCCCGTCAGGGTCTTCATGAAGATCTGCATGAT 256911 >seq7114 Length=58683 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/228 (70%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| |||| || | ||| ||| |||| ||||| ||||| || | || | || Sbjct 894 CTCAGCACCATGTACAGAGTGGACTCTTTCTTGATGTTGTAGTCAGACAAAATGTGGCCA 953 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| | ||| || ||||| ||||| | | |||||| | || | || |||||| Sbjct 954 TCCTCCAGCTTCTTGCCAGCGAATATCAGCCTCTTCTGGTCAGGTGGGATGCCTTCCTTG 1013 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCT--ATCGATT--CATTGGCCTCGACAT--CAACG 34936 || | || || ||||| || || || | | || ||| |||||| | ||| Sbjct 1014 TCTTGGATCTTGGCCTTGAC--ATTCTTGATGGTGTGTCACTGGGCTCGACCTTTCAAGA 1071 Query 34937 GTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAGTG 34984 || |||||||| || || ||||| |||||||||||||||||| | ||| Sbjct 1072 GTGATGGTCTTGCCTGTCAGGGTTTTTACAAAGATCTGCATGTTGGTG 1119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325310044498313