Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value SEQ23137 93.3 3e-14 SEQ28820 87.8 1e-12 SEQ23565 86.0 5e-12 SEQ57164 84.2 2e-11 SEQ31259 82.4 6e-11 >SEQ23137 Length=3047 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| |||||||| || || | || || || ||||| || |||| || | Sbjct 249 AAGATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACGCTCGAGGTTGAACCC 190 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || ||| | | | ||||| ||||| ||||| ||||| | || ||| Sbjct 189 TCAGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 130 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||||||||| || | ||| || || |||||||| || | | || || | |||||| Sbjct 129 CAGCAGAGACTGATCTCTGCTGGAAAGCAGCTGGAAGATGGCCCTACTTTGTCTGACTAC 70 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAA 107792 |||||||||||||||||||| | || | ||||||||| | || || || ||| ||| Sbjct 69 AACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTCCGTGGTGGTGCTAAGAAA 10 Query 107793 A 107793 | Sbjct 9 A 9 >SEQ28820 Length=113666 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| ||||| | || |||||||||||||| || | ||| || || |||||||| Sbjct 62384 GATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAA 62325 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | || || | |||||||||||||||||||||||||| | || | |||||| Sbjct 62324 GATGGCCGTACTTTGTCTGACTACAACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTG 62265 Query 107769 AGA 107771 ||| Sbjct 62264 AGA 62262 >SEQ23565 Length=11847 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || ||||| ||||| || |||||||| ||| | || ||| | | Sbjct 9960 AATGCAGATCTTCGTGAAAACCTTAACTGGTAAAACCATCACCCTAGAGGTCGAGCCCAG 9901 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | || || |||||| || || |||||| | ||| || || Sbjct 9900 TGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 9841 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | |||||| || |||||||| || | | || || | |||||||| Sbjct 9840 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 9781 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || || ||||| || ||||| |||| Sbjct 9780 CATCCAGAAAGAGTCCACTCTGCACCTGGT 9751 >SEQ57164 Length=103104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| |||||||| || || | ||||| || ||||| || || | | || | Sbjct 21297 AAGATGCAGATTTTTGTGAAGACCCTTACAGGGAAGACCATCACGCTCAAGGCTGAACCC 21356 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || ||| | | | ||||| ||||| ||||| ||||| | || ||| Sbjct 21357 TCAGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 21416 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||||||||| || | ||| || || |||||||| || | || || | |||||| Sbjct 21417 CAGCAGAGACTGATCTCTGCTGGAAAGCAGCTGGAAGATAGCTGTACTTTGTCTGACTAC 21476 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAA 107792 |||||||| |||||||| || | || | ||||||||| | || || || ||| ||| Sbjct 21477 AACATTCAGAAGGAGTCCACCCTTCATCTTGTGTTGAGACTCCGTGGTGGTGCTAAGAAA 21536 Query 107793 A 107793 | Sbjct 21537 A 21537 >SEQ31259 Length=129631 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| ||||| | || |||||||||||||| || | ||| || || |||||||| Sbjct 129353 GATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAA 129294 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | || || | |||||||||||||||||| ||||||| | || | |||||| Sbjct 129293 GATGGCCGTACTTTGTCTGACTACAACATTCAAAAGCAGTCTACCCTTCATCTTGTGTTG 129234 Query 107769 AGA 107771 ||| Sbjct 129233 AGA 129231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398408038364203