Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value SEQ23565 111 1e-19 SEQ28820 105 5e-18 SEQ23137 105 5e-18 SEQ35906 104 2e-17 SEQ37766 102 6e-17 SEQ31259 100 2e-16 seq1037 95.1 9e-15 SEQ50471 87.8 1e-12 SEQ11338 86.0 5e-12 >SEQ23565 Length=11847 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| ||||| || ||||| || || | | |||||| | Sbjct 9745 CGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 9804 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| ||| | |||| || ||||| || || || || || || ||| Sbjct 9805 TCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTG 9864 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| |||||| | || | |||||| | || || || || || || Sbjct 9865 TCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCTAGGGTGATG 9924 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| |||||||||||||| || || ||||||||| Sbjct 9925 GTTTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 9960 >SEQ28820 Length=113666 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || ||||||||||| || || | | || || ||| Sbjct 62265 CAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 62324 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | |||| ||| |||||||| || ||||| || || || || Sbjct 62325 TTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 62384 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| |||||| || |||| || || || || || || Sbjct 62385 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 62444 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || | | ||| || ||||| |||||||| || Sbjct 62445 CTTCCCCATCAGGGTCTTCACAAAAATCTGCATCTT 62480 >SEQ23137 Length=3047 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || ||||||||||| || || | | || | ||| Sbjct 34 CAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAGGGCCATC 93 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | |||| ||| |||||||| || ||||| || || || || Sbjct 94 TTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 153 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| |||||| || |||| || || || || || || Sbjct 154 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGT 213 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | ||| || ||||| |||||||| || Sbjct 214 CTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 249 >SEQ35906 Length=62346 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | | || ||| Sbjct 33461 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGCACGGCCATC 33402 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | |||| ||| ||| |||| || ||||| || || || || Sbjct 33401 TTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCCGATCAGGAGGAATTCCTTCCTTATC 33342 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| ||||| || |||| || || || || || || Sbjct 33341 CTGGATCTTGGCCTTTACATTTTCTATTGTGTCCGAGGGTTCAACCTCGAGTGTGATGGT 33282 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTA 29790 || || || | ||| || ||||| |||||||| ||| Sbjct 33281 CTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCTTA 33245 >SEQ37766 Length=173039 Score = 102 bits (112), Expect = 6e-17 Identities = 155/219 (71%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||| | |||||| || || || ||||||||||| || || | | || | ||| Sbjct 157087 AGCACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCT 157146 Query 29635 TCGAGTTGTTTGCCAGCATATA----TCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || |||||| | | ||| ||| |||||||| || ||||| || || || Sbjct 157147 TCCAGCTGCTTTCCAGCAAAGATCAGTCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 157206 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || || || | || ||| |||||| |||||| || |||| || || || || || Sbjct 157207 ATCCTG-GATCTTGGCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGAT 157265 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || | ||| || ||||| |||||||| || Sbjct 157266 GGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 157304 >SEQ31259 Length=129631 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || | ||||||||||| || || | | || || ||| Sbjct 129234 CAACACAAGATGAAGGGTAGACTGCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 129293 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | |||| ||| |||||||| || ||||| || || || || Sbjct 129294 TTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 129353 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 ||| | || || ||| ||||| |||||| || |||| || || || || || || Sbjct 129354 TTGGATCTTGGCCTTTACATTTTCTGTAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 129413 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || | ||| || ||||| |||||||| Sbjct 129414 CTTCTCTGTAAGGGTCTTCACAAAAATCTGCAT 129446 >seq1037 Length=126922 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| || || || ||||||||||| || || | | || || ||| || || || Sbjct 82614 ATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTG 82555 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 || |||||| | |||| ||| |||||||| || | || | || || || || | || Sbjct 82554 CTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGATATTCTTTCCTTATCCTGGATCTT 82495 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| |||||| |||||| || ||| || ||||| || || || || || || Sbjct 82494 GGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACCTCAAGCGTGATGGTCTTCCCCGT 82435 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 | ||| || ||||| |||||||| || Sbjct 82434 AAGGGTCTTCACAAAAATCTGCATCTT 82408 >SEQ50471 Length=54286 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/218 (70%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 42291 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAG--ACAGTACGGCCATC 42234 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | |||| ||| | |||||| || ||||| || || || || Sbjct 42233 TTCCAGGTGCTTTCCAGCAGAGATCAGTCTCTTCTGATCAGGAGGAATTCCTTCCTTATC 42174 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 | | | || ||| |||||| |||||| || |||| || || || || | ||| Sbjct 42173 CTCGATCTCGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGACAGT 42114 Query 29754 TTTGCCAGTTAA--GGTTTTAACAAATATCTGCATTTT 29789 || | | ||| ||| || ||||| |||||||| || Sbjct 42113 CTT-CTACCTAACGGGTCTTCACAAAAATCTGCATCTT 42077 >SEQ11338 Length=128349 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 ||| || ||||| || || |||||||| || || | | | || ||| || || || Sbjct 64139 ATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGAACGGCCATCTTCCAGCTG 64080 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 || |||||| | ||| ||| |||||| | || ||||| || || || || || | | Sbjct 64079 CTTCCCAGCAAAGGTCAGTCTCTGCTGAGCAGGAGGAATTCCTTCCTTATCCTGGATCTC 64020 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || || |||||| |||||| || |||| || ||||| | || || || || || Sbjct 64019 AGCCTTTCCATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCATAATGGTCTTCCCTGT 63960 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 | ||| || ||||| ||||||||||| Sbjct 63959 AAGGGTCTTCACAAAAATCTGCATTTT 63933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384766488831207