Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value SEQ23565 154 1e-32 SEQ43829 138 1e-27 SEQ11330 123 2e-23 SEQ45421 114 1e-20 SEQ17007 114 1e-20 seq7114 111 2e-19 SEQ23137 87.8 2e-12 >SEQ23565 Length=11847 Score = 154 bits (170), Expect = 1e-32 Identities = 158/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTG 133516 |||| |||||||||||||| || ||||| ||| || ||| | | | || || ||||| Sbjct 9073 TGTAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTG 9131 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||||||||| | || |||| ||||||||| || ||||||||||||||||| |||||| Sbjct 9132 CTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTT 9191 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | ||||| | ||||| ||||| ||||||| || || | ||||| ||| ||||| || Sbjct 9192 TGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGT 9251 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 9252 CAGGGTCTTCACAAAGATCTGCAT 9275 Score = 152 bits (168), Expect = 5e-32 Identities = 154/198 (78%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| ||| || ||| | | | || || ||||||||||| Sbjct 9307 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGCC 9365 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| ||||||||| || ||||||||||||||||| ||||||| ||| Sbjct 9366 CGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTT 9425 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 9426 GACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGT 9485 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 9486 CTTCACAAAGATCTGCAT 9503 Score = 152 bits (168), Expect = 5e-32 Identities = 154/198 (78%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| ||| || ||| | | | || || ||||||||||| Sbjct 9535 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGCC 9593 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| ||||||||| || ||||||||||||||||| ||||||| ||| Sbjct 9594 CGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTT 9653 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 9654 GACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGT 9713 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 9714 CTTCACAAAGATCTGCAT 9731 Score = 152 bits (168), Expect = 5e-32 Identities = 154/198 (78%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| ||| || ||| | | | || || ||||||||||| Sbjct 9763 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGCC 9821 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| ||||||||| || ||||||||||||||||| ||||||| ||| Sbjct 9822 CGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTT 9881 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || || | ||||| |||||| || || | || Sbjct 9882 GACATTCTCAATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTTTTACCAGTTAAGGT 9941 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 9942 TTTCACGAAGATCTGCAT 9959 >SEQ43829 Length=74093 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 42472 GGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 42414 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || || || ||||||||||| |||||| || Sbjct 42413 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCT 42354 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||||||| || || | ||||| ||| ||||||||||| | Sbjct 42353 TCACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGG 42294 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||||||||||||| Sbjct 42293 TCTTCACGAAAATCTGCATG 42274 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 42244 GGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 42186 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || || || ||||||||||| |||||| || Sbjct 42185 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCT 42126 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 42125 TCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGG 42066 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 42065 TCTTCACGAAGATTTGCAT 42047 >SEQ11330 Length=6390 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| | || |||| ||||||||| || ||||||||||||| | Sbjct 6103 TCCTCCAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTCG 6044 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | ||| | ||||| ||||||| || || | |||| | Sbjct 6043 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGAGTGATG 5984 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| ||||| || || ||||| ||||||||| Sbjct 5983 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 5948 >SEQ45421 Length=309261 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| |||||| || ||| | || || ||| || ||||| ||||||||||| Sbjct 257111 GGTGGACTTTTTCTGGATGTTGAAGTCAGACAGGGTGCACCCATCCTCCAGCTGCTTGCC 257052 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| ||||||||| || | ||||||||||||| | |||| || |||| Sbjct 257051 AGCGGATATCAGCCTCTGCTGGTCAGGTGAGATGCCTTCCTTGGCTTGGATC-TTGGCTT 256993 Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 || | ||| | |||| ||||||| || || |||| ||| ||||| ||||| | Sbjct 256992 TGGCATTCTCCATGGTGTTACTGGGCTCAACCTCACAAGTGATGGTCTTGCCCGTCAGGG 256933 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || | ||| ||||||||| Sbjct 256932 TCTTCATGAAGATCTGCATG 256913 >SEQ17007 Length=364713 Score = 114 bits (126), Expect = 1e-20 Identities = 133/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| |||||||| || || ||| | | | ||||| |||||||||| Sbjct 137620 GGTGGACTCTTTCTGGATATTGTAGTCAGACAGGGTGCGGCCA-TCCTCCAGCTGCTTGC 137562 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| || |||| ||||||||| || ||||||||||||| ||| ||||||| || Sbjct 137561 CAGCGAGTATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTCGTCTTTGATCTTGGCCT 137502 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 ||| || ||| | ||||| |||| || | || | |||| | | ||||| |||| Sbjct 137501 TGACCTTCTCGATGGTGTCACTGGGTTCGTCCTCAAGAGTGATGCTCTTGCCTGTCA 137445 >seq7114 Length=58683 Score = 111 bits (122), Expect = 2e-19 Identities = 149/203 (73%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||| || ||||| || || || | | | ||||| |||| |||||| Sbjct 912 GTGGACTCTTTCTTGATGTTGTAGTCAGACAAAATGTGGCCA-TCCTCCAGCTTCTTGCC 970 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| || |||||| || ||||||||||||||||| |||||| ||| Sbjct 971 AGCGAATATCAGCCTCTTCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTT 1030 Query 133583 GAGCTGCTCAA--CCGTGTCGGTGGGCTCCAC--GTCGACGGTGACGGTTTTGCCGGTCA 133638 || | || | ||||| ||||||| || || | |||| ||| ||||| |||| Sbjct 1031 GACATTCTTGATGGTGTGTCACTGGGCTCGACCTTTCAAGAGTGATGGTCTTGCCTGTCA 1090 Query 133639 GAGTTTTTACGAAAATCTGCATG 133661 | |||||||| || ||||||||| Sbjct 1091 GGGTTTTTACAAAGATCTGCATG 1113 >SEQ23137 Length=3047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAGCT 133515 ||| | ||| ||||| || || || ||||| || || || || | | || || |||| Sbjct 43 ATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAGGGCCA-TCTTCCAGCT 101 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || || | |||||| || ||||| || |||||||| || ||||| Sbjct 102 GCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCT 161 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | || | ||||| | ||| || || |||| |||| ||| || || | Sbjct 162 TGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCG 221 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || ||||||||||| Sbjct 222 TCAGGGTCTTCACAAAAATCTGCAT 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482838114781480