Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value SEQ42930 269 3e-67 seq9275 158 1e-33 SEQ24951 149 7e-31 >SEQ42930 Length=93363 Score = 269 bits (298), Expect = 3e-67 Identities = 678/1026 (66%), Gaps = 11/1026 (1%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || |||||||||| ||||| ||| ||| Sbjct 31645 CCAGGGCTTTATGCCTCAGATGCTCATCCAGACACTGGATGGCGAAGGGGTCGACGTCCA 31586 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||||||||||| || || ||||| || || || ||||| | | || |||| Sbjct 31585 CATCGAACTTGTTGGCAAAAAGGTGGTGT---TTGCGCAGCATCCATCTCAAGTCACCCG 31529 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| ||||||||||| |||||||| || || |||||||| || || | || || Sbjct 31528 CTCCGAAGACGCACACGGAGCGCACGTGGACTCCACTGCACGGGGGGTAAGGAGCGCCTC 31469 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || ||| |||| |||||||| || ||||| | || ||| | |||||| | Sbjct 31468 TGGAAACGTCGCCTTCGAAGTACTGCCACTTGACAAACCTCGCGACAGCATTCATGTCAG 31409 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | ||| ||||| || ||| || || | ||||| || | || | | ||| | | Sbjct 31408 ACAAGTCATACTTATAG-CTGGAGGGGCGAGAACCAGGGACTTCAGGGATCCGCTGGATA 31350 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| ||| |||||||| || || || |||| || ||| ||||| |||| | Sbjct 31349 GTGGCCCAAAGGAACTCGTCTGGGCTGTATGTGTCCTGCGCCCATTCCATAAACTTTTGG 31290 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | ||| || | ||| | | || || ||| | || | |||||| ||||| Sbjct 31289 ATATTTTCATTTTCTAGCACATGGCCTACATATTCCCTACTGACCACAAAGTAGGCGCTG 31230 Query 162478 CCAGAAAACACGGG---TATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACT 162534 || ||||| | || | || || ||||| || |||| || || ||||| Sbjct 31229 CCTGAAAAAAGAGGAGTTTTGAGT---GGAGGCTGCGATTTGGCTACCCCAGTGTTAGTC 31173 Query 162535 ACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG 162594 | | | || || || | ||| | ||| |||| || | ||| ||| || | Sbjct 31172 AGCTTCCCATCAACAATAGTGTGCCGCTTTTTCCATCTTTCTTCCTTGTTGGGAGGCATC 31113 Query 162595 TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 | || || || || |||| ||| || | ||| |||| | || || || || Sbjct 31112 TTCTCAGTTTCCAGGTTGTTTTCACCTATGAATGACTTGAGCTTCCTGACAATTTCCAGG 31053 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 ||||| |||| || || || | || || |||||||| | || ||||| || | | Sbjct 31052 TTGGTTTTAATAGGGAAATCCATACCACAAAGATTAATCAAGTACTTCCAGTTTGCATTC 30993 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | || ||| || |||| | ||||| || || ||||| || |||||||| || || || Sbjct 30992 ATTCTGTAGAGGTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGACTCCAGGAGGCATAA 30933 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || |||||||| |||| ||||||||||| ||||| || || | || |||| | Sbjct 30932 ACAACATTCTCCAACTGGCTGGCCACAAAGACATTATCGAAGCAGGATGCAATGCCCACC 30873 Query 162835 ACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGA 162894 ||||| | | || || |||||| | || || || | |||||| | |||||| Sbjct 30872 ACGGCGGCTAAAAAGGATTCCTCTGCTTTCTTGTCCACATGGATGCAGTAGAAATTCTGG 30813 Query 162895 GGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATA 162954 || ||||||||||||||| | || || | ||| || |||||||| || ||||| || Sbjct 30812 GGCATGTAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATCTTATGATGAACCACTATG 30753 Query 162955 GAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGG 163014 ||||| || || || || | ||||| || ||| || | | | || || ||||| Sbjct 30752 GAATATGCAATTGGAAAGCCTGCCTCTTCTTTACTAAGGGGCTCCACAATATATTTGCGA 30693 Query 163015 TCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAGGACTCCGCGGTCAATCTG 163074 || | || | || ||||| | ||||||||| | ||| | || |||| | || Sbjct 30692 GTTCTGATGAAAGAGGCGCAGTCATGCGTCATGTTTATATAGTCATACGGGGTCCACCTT 30633 Query 163075 GGTCGC 163080 || ||| Sbjct 30632 GGGCGC 30627 >seq9275 Length=48210 Score = 158 bits (174), Expect = 1e-33 Identities = 441/664 (66%), Gaps = 17/664 (3%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || || | |||||| || | | || || | | | Sbjct 22636 TCCAGTTAAAGTAACTAAGGTACAGCTTATTGTTTTTGTCAACTTCCTTCAGATACTTTG 22577 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 ||| || | || || | || || | ||| |||||||| | || | || | |||| Sbjct 22576 CCAACTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCAGCTGGAATATAAT 22517 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| |||||| || | ||||| | || |||| || | Sbjct 22516 TCTCATAGTTTTCCCTAGATGGTCCGAGGACAACAGGTACTGAGCCAGCCAAAAATGCAT 22457 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | || || ||||| | ||||| |||| Sbjct 22456 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGAATTGAATTTTCAAAAGACAGATAAAATT 22397 Query 177127 TACAGGAAGATAGTAGCGGGA-TGAAGTCATCATCGGGTATATAATCTCCTACTACGTTC 177185 |||| | ||||| | | |||| | | || | ||| | ||| ||||| | | | | Sbjct 22396 TACAAGTAGATA-TGGTGGGAATCAGGTTCTTATCATTCACATACTCTCCAAACGCTTGC 22338 Query 177186 CCGTATACATGTATATCT--ATGTGTTTACTGAGCTCTAGGTAGTATCTCGATC-TCACG 177242 || |||| ||| |||| || || |||||||| |||||| || || | | | Sbjct 22337 CC--ATACGTGTGGATCTCAATACTCTTGCTGAGCTCGTTGTAGTA-CTTGACCCTGGCA 22281 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCG-GGAACGGG 177301 || || |||||| || || ||||||||||| |||||||| ||||||| || || Sbjct 22280 TGTTCCGGGTTCCAGTTACTCACGACCCAGCACACTAACTTT-TCTTTGCTTGGCACTTC 22222 Query 177302 ATTCGATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 | || | || | | | || | ||| | | ||||| ||||| |||||||| || Sbjct 22221 AAACG---CAAAGGGATTCGTGCTCACCGTCAAGAACCCATAAGGCACTTGAATATCTGA 22165 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC--TTGTTTGAAGGGG 177419 |||||| | ||| || | || || ||||| | || || || || | |||| |||| Sbjct 22164 GTCGCGGCGGTAGGTCAGAGTCAGGTTGAACAAGTGCTCAATGCCACTCTTTTG--GGGG 22107 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479 | | | |||| || |||||||||||||| |||||||| ||||||| ||| |||| | | Sbjct 22106 GTATGAGTGGGTGACTCTAAGTTCATCCAAATCCACTTCTGAAAGGGTGGCCTGGCCTGC 22047 Query 177480 GTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCT 177539 ||||| || |||| || || ||||||||||| | | || || | || | Sbjct 22046 TGAGGTAAGTTAGTCAGATCCCAGCTGATGTCTCTGTGGTGTATCAGGACCGCGTGGGAT 21987 Query 177540 TTGT 177543 |||| Sbjct 21986 TTGT 21983 >SEQ24951 Length=79824 Score = 149 bits (164), Expect = 7e-31 Identities = 226/322 (70%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || || | | ||||| | || || || ||||| ||||| || | || Sbjct 48427 CATAGAGGGTGAGGCAAGCTGTTCCCGAGACCTTCCCAGAACCAAAGGTATTGAAGAGAC 48486 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| | ||||| || || ||||| ||||||||||| || || | | | || | || Sbjct 48487 ACATGTAGCAGCCCTCATCATCCACTGTGGTGTTCCAGAAGGTGATGCTCGTGTTCCAGA 48546 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || | |||||||| || | ||| | || | ||||||||| ||||| || || Sbjct 48547 GTCCCAGCTCAGTAATGTTTACTCTGTCTCTATAGGCAGGCTGGACCACAACCCCATGGG 48606 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 | | |||| | || |||||| || |||||| ||| || |||||||||| || || | Sbjct 48607 TTTTGCTGTAAGTAATCATGTTCTCTGGGCTCACAGCTTTCTTCTTCTGCCATGTCACAA 48666 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||| | | |||| ||||| |||| ||| || |||| ||||| | | | Sbjct 48667 TCAAGGGTTCCTGGGATGTTTTCAGAGAACATCGTAAGGATGCAGATGTGTGGAGCAGCT 48726 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 |||||||| || |||||||| Sbjct 48727 TTCTTTCGTCCTGGGTTACCAC 48748 Score = 109 bits (120), Expect = 6e-19 Identities = 152/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 171517 GTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACT 171576 ||| || |||||||||| || || || | ||| ||||| |||| | || || ||| | Sbjct 46215 GTCAGTCACAGTCCCCAGGTACAAAACCTGGCAGATCACTTCCT---TCCCAACCTGATT 46271 Query 171577 TTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATG-TAGAA 171635 || || ||||| || | || ||||| || ||||||||||||||||| ||| ||| Sbjct 46272 CTTGGGGTCTTTAACCCGGAGGATGCTGGTGACAGATGTAGTCCCGTTTGAATGGTAGTG 46331 Query 171636 CGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTG 171695 | | | |||||| || || ||||| || || | | ||||| | || |||| |||| Sbjct 46332 AG-TCTCAGTACTGTTCTCAATTCCTGACCCAGTGCCCTTCCAGGAGATGGCAGGGGCTG 46390 Query 171696 GTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 | | ||||| ||||||||||| ||||||| Sbjct 46391 GGCGGGCAGTCGCAGAGCAAGTGATGTTTA 46420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577734794219200