Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1037 122 2e-22 SEQ23565 96.9 8e-15 SEQ28820 95.1 3e-14 SEQ31259 89.7 1e-12 SEQ57164 86.0 1e-11 SEQ23137 86.0 1e-11 SEQ15017 86.0 1e-11 SEQ13217 86.0 1e-11 >seq1037 Length=126922 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| | || || ||| || ||| Sbjct 82414 CAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACGCTTGAGGTTGAATCCTCGGAC 82473 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| ||||| || || || ||| |||| | || || || Sbjct 82474 ACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAAGAATATCTCCTGATCAGCAG 82533 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||| || ||||||||| |||||||||| | |||||| | || |||||| | Sbjct 82534 AGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAACATT 82593 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 || || |||||||| ||||| |||||||||||||| Sbjct 82594 CAAAAGGAGTCTACCCTTCATCTTGTTTTGAGACT 82628 Score = 98.7 bits (108), Expect = 2e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 |||||||||||||| ||||| |||||||| || || | || ||||||| |||||| | Sbjct 82628 AGTCTCAAAACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGG 82569 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 |||||||||||||||||||| || ||||| || Sbjct 82568 CCATCTTCCAGCTGCTTTCCAGCAAAGATCAG 82537 >SEQ23565 Length=11847 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||| || || ||||| |||| || || |||| Sbjct 9272 CAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGTGAC 9213 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || || ||||| || || ||| || Sbjct 9212 ACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGCAG 9153 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| |||||||||| | || || |||| |||||| || Sbjct 9152 AGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 9093 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| ||||| ||||| || Sbjct 9092 CAGAAAGAGTCCACTCTACACCTGGT 9067 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||| || || ||||| |||| || || |||| Sbjct 9500 CAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGTGAC 9441 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || || ||||| || || ||| || Sbjct 9440 ACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGCAG 9381 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| |||||||||| | || || |||| |||||| || Sbjct 9380 AGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 9321 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| ||||| ||||| || Sbjct 9320 CAGAAAGAGTCCACTCTGCACCTGGT 9295 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||| || || ||||| |||| || || |||| Sbjct 9728 CAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGTGAC 9669 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || || ||||| || || ||| || Sbjct 9668 ACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGCAG 9609 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| |||||||||| | || || |||| |||||| || Sbjct 9608 AGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 9549 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| ||||| ||||| || Sbjct 9548 CAGAAAGAGTCCACTCTGCACCTGGT 9523 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || || ||||| || || ||| || || || ||||| Sbjct 9884 GTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGAGGCTGATCTTT 9825 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | || || |||| |||||| ||||||||||||| Sbjct 9824 GCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCC 9765 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 9764 ACTCTGCACCTGGT 9751 >SEQ28820 Length=113666 Score = 95.1 bits (104), Expect = 3e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 |||||||| ||||| ||||| |||||||| || || | || ||||||| |||||| | Sbjct 62260 AGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGG 62319 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 |||||||||||||||||||| || ||||| || Sbjct 62320 CCATCTTCCAGCTGCTTTCCAGCAAAGATCAG 62351 >SEQ31259 Length=129631 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 |||||||| ||||| ||||| ||||||| || || | || ||||||| |||||| | Sbjct 129229 AGTCTCAACACAAGATGAAGGGTAGACTGCTTTTGAATGTTGTAGTCAGACAAAGTACGG 129288 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 |||||||||||||||||||| || ||||| || Sbjct 129289 CCATCTTCCAGCTGCTTTCCAGCAAAGATCAG 129320 >SEQ57164 Length=103104 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || |||||||| ||||| ||||| || ||||| ||||| | || ||||||| |||||| Sbjct 21520 CGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTA 21461 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | | |||||||||||||||||| || |||| || Sbjct 21460 CAGCTATCTTCCAGCTGCTTTCCAGCAGAGATCAG 21426 >SEQ23137 Length=3047 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || |||||||| ||||| ||||| |||||||| || || | || ||||||| |||||| Sbjct 26 CGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 85 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 |||||||||||||||||||| || |||| || Sbjct 86 GGGCCATCTTCCAGCTGCTTTCCAGCAGAGATCAG 120 >SEQ15017 Length=62173 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||| | ||||| || |||| || || | |||||||||| |||||| Sbjct 45928 CGAAGTCTCAACACAGGTTGAAGGGTGGACTTCTTTTGAATGTTATAGTCAGACAAAGTA 45869 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCC 204848 | ||||||||||||||| || || || | ||| |||| Sbjct 45868 CGTCCATCTTCCAGCTGTTTACCAGCAAGGATGAGCC 45832 >SEQ13217 Length=170878 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 |||||||| ||||| ||||| || ||||| ||||| | || ||||||| |||||| | Sbjct 167087 AGTCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGG 167146 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | |||||||||||||||||| || |||| || Sbjct 167147 CTATCTTCCAGCTGCTTTCCAGCAGAGATCAG 167178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180360694748267