Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value SEQ24951 188 8e-43 SEQ47856 132 6e-26 SEQ38160 132 6e-26 SEQ28171 123 3e-23 SEQ48486 95.1 1e-14 SEQ48484 87.8 2e-12 >SEQ24951 Length=79824 Score = 188 bits (208), Expect = 8e-43 Identities = 233/319 (73%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||| |||||||| || || |||||| |||| | || ||| | ||| || ||| Sbjct 48748 GTGGTAACCCAGGACGAAAGAAAGCTGCTCCACACATCTGCATCCTTACGATGTTCTCTG 48689 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | || || ||||| ||||||| || |||||||| | || | | |||||| Sbjct 48688 AAAACATCCCAGGAACCCTTGATTGTGACATGGCAGAAGAAGAAAGCTGTGAGCCCAGAG 48629 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| |||| |||||| ||| ||||| ||||||||||| || |||| |||| Sbjct 48628 AACATGATTACTTACAGCAAAACCCATGGGGTTGTGGTCCAGCCTGCCTATAGAGACAGA 48569 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||| || |||| |||||| ||| | | |||||| || ||||| ||||| | Sbjct 48568 GTAAACATTACTGAGCTGGGACTCTGGAACACGAGCATCACCTTCTGGAACACCACAGTG 48509 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || ||||| ||||||| || ||||| || |||||||| |||||||| ||||||| Sbjct 48508 GATGATGAGGGCTGCTACATGTGTCTCTTCAATACCTTTGGTTCTGGGAAGGTCTCGGGA 48449 Query 171372 GTGGCCTGCCTCACCCTCT 171390 || ||||||||||||| Sbjct 48448 ACAGCTTGCCTCACCCTCT 48430 Score = 168 bits (186), Expect = 8e-37 Identities = 189/253 (75%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || | || || || || | |||||| |||||||| |||||||| || Sbjct 46466 GTACAGCCCATAGTATCCCTTCACTACAACTATTTTGAAGACCACCTAAACATCACTTGC 46407 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||| | ||||||||| | ||| || | |||||| | ||||||| |||||| Sbjct 46406 TCTGCGACTGCCCGCCCAGCCCCTGCCATCTCCTGGAAGGGCACTGGGTCAGGAATTGAG 46347 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| ||| || | |||||| || || ||||| ||||| ||||| | |||| Sbjct 46346 AACAGTACTGAGACTCACTACCATTCAAACGGGACTACATCTGTCACCAGCATCCTCCGG 46287 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 |||||||||||||||| |||| | || ||||| || |||||||| || | | ||||||| Sbjct 46286 GTTAAAGACCCCAAGAATCAGGTTGGGAAGGAAGTGATCTGCCAGGTTTTGTACCTGGGG 46227 Query 171633 AATGTAACTAACT 171645 | ||| ||| ||| Sbjct 46226 ACTGTGACTGACT 46214 >SEQ47856 Length=103108 Score = 132 bits (146), Expect = 6e-26 Identities = 128/167 (77%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 ||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||| || |||| Sbjct 38878 AGGGTTACTTGGGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAGTGA 38937 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| ||||| || || ||||||||| | |||| Sbjct 38938 TGCCCCAGGCAGAGAACCAC------------GGCCCAGAAATCAAGGAGCATTTGAACT 38985 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| || ||| | |||||||| || || ||||||||| ||| Sbjct 38986 CCCTGGGAGAGAAGTTGAAGACCCTCAGGATGCAGCTGCGGCGCTGT 39032 >SEQ38160 Length=80719 Score = 132 bits (146), Expect = 6e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||||| || | ||| || | ||||||||||||||| | ||||||||| ||||||||||| Sbjct 57039 AGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 57098 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 || || || ||||| || || ||||||||||| |||||||| || ||||| || | || Sbjct 57099 ACGCCTAGACCCATATCACCTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACC 57158 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || || |||| || ||| ||||| || ||||| ||||| Sbjct 57159 ACATAGAACTCACAGAGGGCATGGCAAGGAGGCAGTGCCAT 57199 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||| |||||||||||||| || || ||||| |||||||| || || || | Sbjct 58682 GCTCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTCGGGCA 58741 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | | || || | ||||| | ||| |||||||| | ||||||| Sbjct 58742 GAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGATTCTCACTCCC 58801 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| ||| || || |||| | ||||| ||| Sbjct 58802 TTGGAGGACAGTTCTTTAGCATTTGTGGATCCC 58834 >SEQ28171 Length=118966 Score = 123 bits (136), Expect = 3e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 147006 CATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCC 147065 |||||||||| |||| | |||||||| ||||| ||||| || ||||| ||||| || || Sbjct 106828 CATGTAGGTGTGCAGGGCATAGCTGGCAATGTTAAAGGGCACACCCAGACCCATATCTCC 106769 Query 147066 CGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGAT 147125 ||||||||||| |||||||| || ||||| || | |||| || |||| || ||| Sbjct 106768 TGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACCACATAGAACTCACAGAGGGC 106709 Query 147126 GTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGC 147173 ||||| || ||||| ||||| ||| || || ||||||||||| Sbjct 106708 ATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGC 106661 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/181 (73%), Gaps = 5/181 (3%) Strand=Plus/Plus Query 146876 TGAGCTTGGGGAAGGGTCGGGGGT-TC-CTGGCCAGCTGAATTTTCAGGGGCTCCACGTG 146933 ||||||| ||||| |||| | | || ||| |||||||||||||| ||||| | | Sbjct 106437 TGAGCTTTGGGAAAGGTCTTAGTTCTCACTGA--AGCTGAATTTTCAGTGGCTCGATACG 106494 Query 146934 GTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGT 146993 || || | | || || || |||| || || ||||| || || |||| ||| | || Sbjct 106495 ATTCAGCAA-ATATGTGCATCTCCCAAAGTATGGACAAAATCACCTGGCTGCAGGTCCGT 106553 Query 146994 CACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAG 147053 | ||| || ||||||||||||||| ||||||||| ||||||||||| || ||||| Sbjct 106554 GATGTGTGCAGTCATGTAGGTGAGCAGGCCGTAGCTGGCCATGTTGAAGGGCACACCCAG 106613 Query 147054 G 147054 | Sbjct 106614 G 106614 >SEQ48486 Length=288609 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 || ||||||||||| | |||| | || ||||||| ||||||| | || || |||| | Sbjct 825 TATTCTCTGGTGTTCATCATTGGTGTGATAGGCAATGTCCTGGTGGTTCTGGTGCTCACA 884 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || |||||||||| | | |||||||| ||| | |||||| |||||||| | |||| Sbjct 885 CAGCACAAGAGGCTTCGAAGCATGACCAGCATTTACCTGTTTAACCTGGCGGTCTCTGAC 944 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | | ||||| | || || |||||| ||| Sbjct 945 CTGGTCTTCCTCTTCACATTACCTTTCTGGATTGACT 981 >SEQ48484 Length=60551 Score = 87.8 bits (96), Expect = 2e-12 Identities = 196/294 (67%), Gaps = 8/294 (3%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | |||| || | ||||| | |||| | | |||||||| Sbjct 27343 TACTCACTGGTGTTCATCATTGGCCTCCTGGGCAACGTGGTGGTTGTGTTGATCCTCATA 27284 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 ||||| | || ||| || ||||| || |||| |||| ||||| |||| || |||| Sbjct 27283 AAGTATAGGAAGCTACAAATTATGACTAATATCTACCTGCTCAACTTGGCAATTTCTGAC 27224 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT-TCCACTCGGGGGGAACTGGTGG 8789 ||||| | | |||||| |||| || |||||||||| | | || | ||||| Sbjct 27223 CTGCTTTTTCTCTTCACCATCCCGTTCTGGATTCACTATGTTATATGGAATGAGTGGTGT 27164 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 | || ||| ||||||||||| | | || ||| || |||| | || Sbjct 27163 TTTGG-------CCATCACATGTGTAAACTGCTCTCTGGGTTTTATTACCTGGCCTTATA 27111 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 |||||| || | || ||||| ||| |||| | |||||||| || || |||| Sbjct 27110 CAGCGAGATCTTTTTCATCATTCTGCTGACAATTGACAGGTACCTGGCTATTGT 27057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582784700032800