Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value SEQ23565 123 3e-23 SEQ35906 107 2e-18 SEQ23137 105 7e-18 SEQ13217 104 2e-17 SEQ28820 100 3e-16 seq1037 95.1 1e-14 SEQ43829 93.3 4e-14 SEQ31259 93.3 4e-14 SEQ57164 91.5 1e-13 SEQ37766 89.7 5e-13 SEQ25611 82.4 8e-11 >SEQ23565 Length=11847 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| || || || |||||||||||| Sbjct 9733 CCACCTCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 9792 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 9793 AGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 9852 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || ||| ||||| || | ||||| | || || Sbjct 9853 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 9912 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||||||||| ||||| ||||| ||||| || |||||| Sbjct 9913 TCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 9960 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || |||||||| ||||| || || || |||||||||||| Sbjct 9049 CCACCCCTGAGGCGAAGGACCAGGTGTAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 9108 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 9109 AGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 9168 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || ||| ||||| || | ||||| | || || Sbjct 9169 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 9228 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 9229 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9275 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| || || || |||||||||||| Sbjct 9277 CCACCTCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 9336 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 9337 AGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 9396 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || ||| ||||| || | ||||| | || || Sbjct 9397 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 9456 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 9457 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9503 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| || || || |||||||||||| Sbjct 9505 CCACCTCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 9564 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 9565 AGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 9624 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || ||| ||||| || | ||||| | || || Sbjct 9625 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 9684 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 9685 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9731 >SEQ35906 Length=62346 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||||| |||||| || || || ||||| |||||||||||||||||||| | | Sbjct 33475 CCACCACAGAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 33416 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | || || ||||| || || ||||| |||| | |||| |||| || || Sbjct 33415 AAAGCACGGCCA-TCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCCGATCAGGAGG 33357 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || || || || || || | |||||| || | ||| || Sbjct 33356 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTGTCCGAGGGTTCAAC 33297 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| || ||||| || || || | || || || ||||| ||||| || Sbjct 33296 CTCGAGTGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCTT 33246 >SEQ23137 Length=3047 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||||| |||||| || || || || || |||||||||||||||||||| | | Sbjct 20 CCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 79 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || ||||| || || ||| | |||| | ||||||||| || || Sbjct 80 AAAGTAGGGCCA-TCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGG 138 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || || || || || || | ||||| || | ||| || Sbjct 139 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAAC 198 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || ||||| || || || | || || || ||||| ||||| ||| Sbjct 199 CTCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTTG 250 >SEQ13217 Length=170878 Score = 104 bits (114), Expect = 2e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 134495 GAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGT 134553 ||||| |||||| || || || ||||| ||||| |||||||||||||| | ||| || Sbjct 167086 GAGTCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAA-AGTAC 167144 Query 134554 GAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 | || || ||||| || || ||| | |||| | ||||||||| || || || |||| Sbjct 167145 GGCTATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTT 167204 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAG 134673 | || ||||| || || || || || | ||||| || ||||| || || || | Sbjct 167205 CCTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACCTCAAGCG 167264 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | ||||| || || || | || || || ||||| ||||| ||| Sbjct 167265 TGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCTTG 167308 >SEQ28820 Length=113666 Score = 100 bits (110), Expect = 3e-16 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 134495 GAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGT 134553 ||||| |||||| || || || || || |||||||||||||||||||| | ||| || Sbjct 62259 GAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTAC 62317 Query 134554 GAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 | || || ||||| || || ||||| |||| | ||||||||| || || || |||| Sbjct 62318 GGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTT 62377 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAG 134673 | || || || || || || || || | ||||| || | ||| || ||||| | Sbjct 62378 CCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCG 62437 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | ||||| || || | | || || || ||||| ||||| ||| Sbjct 62438 TGATGGTCTTCCCCATCAGGGTCTTCACAAAAATCTGCATCTTG 62481 >seq1037 Length=126922 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 134495 GAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGT 134553 ||||| ||| || || || || || || |||||||||||||||||||| | ||| || Sbjct 82629 GAGTCTCAAAACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTAC 82571 Query 134554 GAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 | || || ||||| || || ||||| |||| | ||||||||| || | ||| | || Sbjct 82570 GGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGATATTCTTT 82511 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAG 134673 | || || || || || || || || | ||||| || ||||| || || || | Sbjct 82510 CCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACCTCAAGCG 82451 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | ||||| || || || | || || || ||||| ||||| ||| Sbjct 82450 TGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCTTG 82407 >SEQ43829 Length=74093 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| || || || ||||| || |||||||||||| Sbjct 42273 CCGCCCCTCAGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 42214 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 42213 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 42154 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || || || || | ||||| | ||||| Sbjct 42153 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 42094 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || | || ||||| || ||||| | || || ||||| |||||||||||| Sbjct 42093 TCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 42043 >SEQ31259 Length=129631 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 134495 GAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGT 134553 ||||| |||||| || || || || || | |||||||||||||||||| | ||| || Sbjct 129228 GAGTCTCAACACAAGATGAAGGGTAGACTGCTTTTGAATGTTGTAGTCAGACAA-AGTAC 129286 Query 134554 GAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 | || || ||||| || || ||||| |||| | ||||||||| || || || |||| Sbjct 129287 GGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTT 129346 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAG 134673 | || ||||| || || || || || ||||| || | ||| || ||||| | Sbjct 129347 CCTTATCTTGGATCTTGGCCTTTACATTTTCTGTAGTGTCCGAGGGTTCAACCTCGAGCG 129406 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| || | || | || || || ||||| ||||| Sbjct 129407 TGATGGTCTTCTCTGTAAGGGTCTTCACAAAAATCTGCAT 129446 >SEQ57164 Length=103104 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||||| |||||| || || || ||||| ||||| |||||||||||||| | | Sbjct 21526 CCACCACGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAC 21467 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | || || ||||| || || ||| | |||| | ||||||||| || || Sbjct 21466 AAAGTACAGCTA-TCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGG 21408 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || || || || || || | ||||| || | ||| | Sbjct 21407 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAGC 21348 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | ||| || ||||| || || || | || || || ||||| ||||| ||| Sbjct 21347 CTTGAGCGTGATGGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGCATCTTG 21296 >SEQ37766 Length=173039 Score = 89.7 bits (98), Expect = 5e-13 Identities = 164/236 (69%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||||| | ||| || || || || || |||||||||||||||||||| | | Sbjct 157072 CCACCACGGAGTCTTAGCACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 157131 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAA----AATCAAACGCTGCTGATCGG 134601 || || || || || ||||| || || ||||| | ||| | ||||||||| | Sbjct 157132 AA-AGTATGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCAGTCTCTGCTGATCAG 157190 Query 134602 GCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATT 134661 | || || ||||| || || || | | || | || || || | ||||| || | || Sbjct 157191 GAGGAATTCCTTCCTTATCCTGGA-TCTTGGCTTTACATTTTCTATAGTGTCCGAGGGTT 157249 Query 134662 CCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | || ||||| || ||||| || || || | || || || ||||| ||||| ||| Sbjct 157250 CAACCTCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTTG 157305 >SEQ25611 Length=18984 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/131 (76%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||||||||||||||| | ||| || | Sbjct 14006 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTACG 14064 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT- 134613 | | || ||||| || || ||||||| || | ||||||||| || || || |||| Sbjct 14065 GCAATATTCCAGCTGCTTACCAGCAAAAAACAGCCTCTGCTGATCAGGAGGAATTCCTTC 14124 Query 134614 CTTTTTCTTGA 134624 ||| | ||||| Sbjct 14125 CTTATCCTTGA 14135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504789224356040