Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq4625 107 3e-18 >seq4625 Length=35579 Score = 107 bits (118), Expect = 3e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 213995 CAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTT 214054 ||| | || || || || || |||||||| || || | || ||| | | ||| | Sbjct 14521 CAGCTCATCGATGGAGAGGTGTACCCTCCCACAGTGAGAGACACCCAGGCCGAGATGATC 14580 Query 214055 TACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114 ||| ||| | | ||||| | | || ||||| |||| | || | || || || Sbjct 14581 TACCCGCCCCACATCCCCGAGCACCTGCGGTTCGCTGTGGGCCAGGAAGTCTTCGGCCTG 14640 Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174 ||||| ||| | ||| |||| || | |||||||||| | ||||||||| | || |||||| Sbjct 14641 GTGCCGGGTCTGATGATGTATGCTACTATCTGGCTGCGGGAGCACAACCGAGTGTGCGAC 14700 Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGATCA 214226 ||||| || || |||||||| || ||| | ||||| | | ||||||||| || Sbjct 14701 GTGCTCAAGCAGGAGCACCCCGAGTGGGAGGACGAGCGGTTGTTCCAGACCA 14752 Score = 86.0 bits (94), Expect = 9e-12 Identities = 188/282 (67%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 214601 AGGGAAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACT 214660 || |||||| || || ||||||| | ||| |||||||||| ||||| ||| | || || Sbjct 15987 AGAGAAGGAAATGGCCACCGAGCTGAAAGCCCTCTACGGTGACATCGATGCCATGGAGCT 16046 Query 214661 CTACGCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCT 214720 ||| ||| | || | ||||| || |||| || |||||| |||| || | | | Sbjct 16047 GTACCCTGCCCTGCTGGTGGAAAAGCCTCGTCCAGACGCCATCTTCGGGGAGACCATGGT 16106 Query 214721 CGAGTCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGG 214780 || || || || |||||| ||| ||||| || || ||||||||| || Sbjct 16107 AGAACTTGGAGCACCATTCTCCTTGAAAGGACTTATGGGTAATCCCATCTGCTCTCCTCA 16166 Query 214781 CTACTGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGAC 214840 |||||||| | | ||| | || | || |||| || ||| | | | || | Sbjct 16167 GTACTGGAAGCCAAGCACGTTTGGAGGAGAAGCAGGTTTTAAGATCATCAACACTGCCTC 16226 Query 214841 CCTTCAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTT 214882 |||||||||||||||| | || || ||||| ||||| || Sbjct 16227 AATTCAGTCTCTCATCTGCAATAATGTAAAGGGCTGTCCCTT 16268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722468930208480