Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value SEQ81609 123 3e-23 SEQ39859 114 2e-20 SEQ18817 107 3e-18 SEQ13259 105 9e-18 SEQ52498 95.1 2e-14 SEQ32083 89.7 7e-13 >SEQ81609 Length=287 Score = 123 bits (136), Expect = 3e-23 Identities = 186/261 (71%), Gaps = 5/261 (2%) Strand=Plus/Minus Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937 ||||| ||||| |||||||| || || |||| |||| ||| || ||||| ||| Sbjct 271 TCTTTTACATAAGTATCTATCAAAAGCGAATACGTTTCACTATGAATATTTTCCATCATG 212 Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC-TGAACAAAATCTTTC 39996 || || || || || ||| || | ||||| | | ||| || || | |||||||| | || Sbjct 211 ATTTGGAAACCATAGAAAAATTTAGCTTCGGCATATTGCACTTCATTAACAAAAT-TCTC 153 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 || | ||||||||| || ||||| || ||| || ||||| || | | |||||| || Sbjct 152 AGCAAGATTTTCATTAACGATTCCGTCTGAAGCTGCGAAAAAGGCAAGAATATGTTTTAT 93 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATT---CCAGTCATTGATATCTTTTGATATATC 40113 ||| || ||||| | || ||||| ||||||||| | ||||| ||| | || Sbjct 92 AAAGTAACGCTCATCATCATTTAACTTATTATTCCAGTCATTTAAATCTTGTGACAAGTC 33 Query 40114 TACTTCTTCAGCTGTCCAAAA 40134 | |||||||||||||||||| Sbjct 32 AATTTCTTCAGCTGTCCAAAA 12 >SEQ39859 Length=70141 Score = 114 bits (126), Expect = 2e-20 Identities = 248/365 (68%), Gaps = 7/365 (2%) Strand=Plus/Minus Query 37338 TTATTTCAGTCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTG 37397 ||| ||| ||| || || ||||| ||| | || || || || |||| || | ||| Sbjct 42312 TTAATTCCTTCCCGTGGAGCCAAAACCTCCTGTGCCCCTTTCGGTGTCATCCAGTGCTTG 42253 Query 37398 TACTTCATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCC 37457 ||||| | | || |||||| | || |||| | | || || || | | || ||| || Sbjct 42252 AACTTCTTCTAAGTCTGGATAAAAAATCCGTTCACAAATGAGTTGCACAACTCGATCACC 42193 Query 37458 CGTATTTATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCT 37517 | |||| || ||| || ||||||| ||| | ||| || |||| ||| || || Sbjct 42192 TTTTTTTACTTCAAACTTCTCTTTTCCAAAATTAAACAGCGCAACACCAACATTTCCTCT 42133 Query 37518 ATAATCTTCATCGATTACTCCGCCTCCTACATCAAT-ACCT--TTTAGAGACAAACCCGA 37574 ||||||||||| || || || |||||||||| || | | ||| || ||| || || Sbjct 42132 GTAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGCTTTGCAGCCAAGCCAGA 42073 Query 37575 TCTAGGAGCTATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAAT 37634 || ||||||| ||||||||| || || | || ||| || | |||||||| | Sbjct 42072 TCGTGGAGCTACTCTTCCATAGCACCCAGACGGAACAGCTATCTGAGTGTCTGTTTTCA- 42014 Query 37635 CAATTGTCTTTCTCCA--GGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCC 37692 ||| || ||||||||| || | |||||||||| || || || | | || || ||| Sbjct 42013 CAA-TGGCTTTCTCCATGGGTGGTGTGGTATAATCATAAGCACTGTGCAGGTCCTAGCCC 41955 Query 37693 GCGGC 37697 ||||| Sbjct 41954 GCGGC 41950 >SEQ18817 Length=114269 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||| || || || | || || ||||| || ||||||||||| || || | ||| || Sbjct 113861 TCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCTTT 113920 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||| |||||||| ||||| || |||||||| || ||||| || Sbjct 113921 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 113980 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 113981 ACCACTCTTTCCCC 113994 >SEQ13259 Length=38172 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| |||||||| || |||||| || | || || || ||||| || | Sbjct 24150 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCAATATGGATGT 24091 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || ||||||||||| ||||| ||||| || || ||||| || | || | ||| Sbjct 24090 TGAGAGACTGGCTTTGATCGATAAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTCT 24031 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| |||||||| | ||||||| | | || || | ||||| |||| Sbjct 24030 TCTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 23980 Score = 96.9 bits (106), Expect = 5e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 68946 TGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAA 69005 |||||| | |||||||||||| || || | || | || || |||||||| ||||| | Sbjct 18352 TGATCCCTCATATGTTTCATAGGGGCCATACTCCTTGGCGAGGTCACAACTCGCCTCCAG 18293 Query 69006 TGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATC 69065 || ||||||||||| ||||| || |||| |||||| || || ||||| | || || Sbjct 18292 GGCTCCGTAATAAATCGTTTCAAAGATCTGCTTATTCAGCAACTGGGCTTCGGGGCTCTC 18233 Query 69066 GAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGG 69125 || || || | | || || |||||||| | || || |||||||| || || || Sbjct 18232 AAAGGGGTACCTCATCAAGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGG 18173 Query 69126 TCTATGTCTCTTATTTGA 69143 | || | |||||||| Sbjct 18172 CCGGTGGCGTTTATTTGA 18155 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| || || || ||||| |||||||| || ||||| || || || || | || Sbjct 21439 TGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTCGTGTAAGGCTCAATGGAC 21380 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 || || || ||||| || ||||||||||| ||||| ||||| || || | | ||| || Sbjct 21379 TCGTTGTTCCCCAGGATCTGAGCAGTTGAGGCAGTGGGCATCGGGGCAATAAGTAAGCTG 21320 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 21319 TTTCTTATACCAT 21307 >SEQ52498 Length=29846 Score = 95.1 bits (104), Expect = 2e-14 Identities = 225/338 (67%), Gaps = 8/338 (2%) Strand=Plus/Plus Query 172167 TTTGCTAATACAGAGGGTGGATTTTTGTTCATTGGGCTGGATGGAAATACACGTAAAGTA 172226 ||||| || ||||| || |||| |||||||||||| | ||||| || | ||| || || Sbjct 11946 TTTGCAAACACAGATGGGGGATATTTGTTCATTGGTTTAGATGGGAAGAAACGGCAAATA 12005 Query 172227 ATTGGATTCGATGCTGGACAAGA-ATATCTCGATATTATAGGTCGTGAGATAGAAAAGCG 172285 ||||| || || || || |||| |||| | | ||| |||| ||||||||| | Sbjct 12006 ATTGGTTTTGAAGC-AGAAAAGAGCGATCTTGTGCATCTAGAGAGTGAAATAGAAAAGTG 12064 Query 172286 TGTTAAAAGACTTCATGTTGTGCACTTTTGTGAGAAAAAAGAGGATATCAAATATGCATA 172345 | | ||| | ||| ||||| |||||| | || ||| | || || || | | Sbjct 12065 CATCCAGCAACTGCCTGTCACTCACTTCTGTGAGGAGAAGGAGAACATAAAGTACACGTG 12124 Query 172346 TAGATTCATCAAGGTATATAAACCTGGTGATGAAAATACATCAACATATGTATGTGCTAT 172405 ||||||||| | || | | ||| || | || | ||||||| ||||| | Sbjct 12125 CAGATTCATCGAAGTGCACAGACCAGGAGCTG------TGTGTTCATATGTCTGTGCGCT 12178 Query 172406 CAAAGTGGAGAGATTTTGTTGTGCCGTGTTCACTGATTATCCTGAATCGTGGTATATAGA 172465 | |||||||||||| || ||||| |||||| ||| | ||||| || ||| | | || Sbjct 12179 GAGAGTGGAGAGATTCTGCTGTGCAGTGTTCGCTGCAGAGCCTGAGTCCTGGCACGTGGA 12238 Query 172466 AAATGGTGACATCAAGAGATACACACCGGATGAATGGG 172503 | | | | | ||||| | || |||| ||||||| Sbjct 12239 AGACAGCTGCGTGAAGAGGTTTACTGCGGAGGAATGGG 12276 >SEQ32083 Length=112626 Score = 89.7 bits (98), Expect = 7e-13 Identities = 104/139 (75%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG----TGACATAACTCCCATTT 39326 ||| |||||| |||| || | |||| ||| ||| ||| |||||| || ||||| Sbjct 100938 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTTGACATCACACCCATCC 100996 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | ||||| || || || || ||||| || || || || || ||||| | ||| ||||||| Sbjct 100997 TCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTT 101056 Query 39387 CCATGAAATCAAACGGATT 39405 ||||||| ||||| ||||| Sbjct 101057 CCATGAAGTCAAATGGATT 101075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686080843064280