Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value SEQ32083 105 5e-18 SEQ38160 104 2e-17 SEQ18817 102 6e-17 >SEQ32083 Length=112626 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||||||| | |||| || || ||||| ||||| |||||||||||||| ||||| Sbjct 103830 CAAGAAGTTCAAGTCACAGAGGCCCGTTGTTTCTATGGCTTTCAAATTGCCATGGAAAAC 103771 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || || || |||||||||||||| || || || || ||||| || ||| Sbjct 103770 ATACACTCTGAAATGTACAGTCTCCTTATTGACACTTACATTAAGGAT 103723 Score = 86.0 bits (94), Expect = 5e-12 Identities = 108/148 (73%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| |||| || ||||| || |||||||||||||| | ||||| || |||||||| ||| Sbjct 101081 GTAGAAAATCCATTTGACTTCATGGAAAATATTTCACTAGAAGGAAAGACAAACTTCTTT 101022 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAA---CAAGTGACAATAAA 44605 || || || || || || || ||| | ||||| || ||| || ||| || ||| Sbjct 101021 GAGAAGCGAGTAGGCGAGTACCAGAGGATGGGTGTGATGTCAAGTTCAACAGAGAATTCT 100962 Query 44606 TTTACTACGGATGAAGATTTCTAATTAA 44633 ||||| ||||| || |||||| ||| Sbjct 100961 TTTACCTTGGATGCTGACTTCTAAGTAA 100934 >SEQ38160 Length=80719 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| |||| ||||| ||| | ||| |||| || || ||||| || |||| Sbjct 57201 TGATGGCACTGCCTCCTTGCCATGCCCTCTGTGAGTTCTATGTGGTGAATGGAGAGCTGT 57142 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || | || || || |||||||| ||||| ||||| || || || ||||| || | Sbjct 57141 CTTGCCAGCTTTACCAGAGGTCAGGTGATATGGGTCTAGGCGTGCCCTTCAACATCGCCA 57082 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || |||||||| || |||||||||||| Sbjct 57081 GCTACGCCCTGCTCACCTACATGATTGCACAC 57050 >SEQ18817 Length=114269 Score = 102 bits (112), Expect = 6e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||| || | || || ||||| | ||| ||||| |||||||| || ||||| ||||| Sbjct 113994 GGGGAAAGAGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCTGGATCATTTGCT 113935 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 || ||||| ||| ||||||| |||| | |||||||| | || |||||||||||| | Sbjct 113934 GCTATATTCTGGCTAAAGAAGAGAGGCCTCATGCCTGGACTTACCTTTTCAAATGAGCTG 113875 Query 44243 ATAAGTCGTGATGAAG 44258 || || | ||||||| Sbjct 113874 ATCAGCAGGGATGAAG 113859 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 106919 AAAATCCCTTTGATTTTATGGAAAACATTTCATTAGAAGGGAAAACAAATTTCTTTGAGA 106860 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || | ||| || ||||||||| | | |||||| Sbjct 106859 AAAGAGTTTCTGAGTATCAGCGATTTGCAGTCATG 106825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396988908094135