Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value SEQ32083 96.9 4e-15 SEQ18817 84.2 2e-11 >SEQ32083 Length=112626 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || |||||| |||||||||||||||||||||||||| || | || ||||||||| Sbjct 102677 GCCTTTGCAGCGGTGGAAGGAATCTTCTTCTCTGGCTCTTTTGCATCGATATTCTGGCTC 102618 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||||| || || ||||| ||||| | || ||||| ||||| ||| | | |||||| Sbjct 102617 AAGAAGCGGGGACTGATGCCCGGCCTTACGTTTTCCAATGAGCTTATTAGCAGAGACGAG 102558 Query 60111 G 60111 | Sbjct 102557 G 102557 >SEQ18817 Length=114269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| || |||||||| ||||||||||| || || |||||| |||||||| Sbjct 113979 GCCTTTGC-TGCTGTAGAAGGAATTTTCTTCTCTGGATCATTTGCTGCTATATTCTGGCT 113921 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||| | ||||||||||| || || | || || || |||||||| Sbjct 113920 AAAGAAGAGAGGCCTCATGCCTGGACTTACCTTTTCAAATGAGCTGAT 113873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547863642488880