Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5825 95.1 1e-14 SEQ58005 91.5 2e-13 >seq5825 Length=160960 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| || |||||| ||| | || || ||||| Sbjct 12535 GTGAAAATATAACGAGGGCTTGCAGCATCTTTACCACCATGAAGCCTAGTTCCAAATTGA 12476 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||| || |||||||| || ||| Sbjct 12475 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 12416 Query 117425 ATCGT 117429 || || Sbjct 12415 ATAGT 12411 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| || ||||| |||| |||||||| || Sbjct 12535 GTGAAAATATAACGAGGGCTTGCAGCATCTTTACCACCATGAAGCCTAGTTCCAAATTGA 12476 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | ||| | |||||| |||||| ||||||||||||||||||||| Sbjct 12475 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 12416 Query 152149 ATCGT 152153 || || Sbjct 12415 ATAGT 12411 >SEQ58005 Length=65375 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | || || | ||||||||||| |||||| || |||||||| Sbjct 16989 GTAAAGATGTATCGAGGACTAGCTGAGTCCTTGCCACCATGCAGCCGGGTACCAAACTGA 16930 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| | || ||| ||||| ||||||||||||||||| | | Sbjct 16929 CCAATGGGCTGCAAGAGGTTCAAATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 16870 Query 152149 ATCGT 152153 || || Sbjct 16869 ATGGT 16865 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || ||||| |||| || || | |||||||||||| || || ||||| || || Sbjct 16989 GTAAAGATGTATCGAGGACTAGCTGAGTCCTTGCCACCATGCAGCCGGGTACCAAACTGA 16930 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||||||||||| || ||| |||||||| || |||||||| |||| | Sbjct 16929 CCAATGGGCTGCAAGAGGTTCAAATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 16870 Query 117425 ATCGT 117429 || || Sbjct 16869 ATGGT 16865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546556420034600