Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value SEQ42930 116 5e-21 SEQ29989 109 7e-19 >SEQ42930 Length=93363 Score = 116 bits (128), Expect = 5e-21 Identities = 255/380 (67%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 13659 TATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTG 13718 ||| | ||| |||||| || ||||||| | ||||| || || || || || ||| Sbjct 30700 TATATTGTGGAGCCCCTTAGTAAAGAAGAGGCAGGCTTTCCAATTGCATATTCCATAGTG 30759 Query 13719 ATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAAC 13778 | || || ||||| || ||| | || | |||||||||||||||||| || ||||| Sbjct 30760 GTTCATCATAAGATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTACATGCCCCAGAAT 30819 Query 13779 CTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGG 13836 |||||||| |||| |||||| || | | || | || | || | ||| || Sbjct 30820 TTCTACTGCATCCATGTGGACAAGAAAGCAGAGGAATCCTTTTTAGCC--GCCGTGGTGG 30877 Query 13837 CCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACG 13896 ||| || |||||| ||| || ||||| || | || | | || || || | Sbjct 30878 GCATTGCATCCTGCTTCGATAATGTCTTTGTGGCCAGCCAGTTGGAGAATGTTGTTTATG 30937 Query 13897 GCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCG 13956 |||||||||||| || ||||| ||||||| ||||||| |||||| || | Sbjct 30938 CCTCCTGGAGTCGGGTTCAGGCTGACCTCAACTGCATGAAGGACCTCTACAGAATGAATG 30997 Query 13957 TCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGG 14016 || |||| |||| || | || || || || ||||| ||||| | || |||||||||| Sbjct 30998 CAAACTGGAAGTACTTGATTAATCTTTGTGGTATGGATTTCCCTATTAAAACCAACCTGG 31057 Query 14017 AGATCGTGCGGGCGCTGAAG 14036 | || || || ||| ||| Sbjct 31058 AAATTGTCAGGAAGCTCAAG 31077 >SEQ29989 Length=139411 Score = 109 bits (120), Expect = 7e-19 Identities = 284/431 (66%), Gaps = 4/431 (1%) Strand=Plus/Minus Query 13608 GACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGG--GTATCTCG 13665 |||||| | | ||||||||||||||| | | |||| ||| ||| || || | | Sbjct 24559 GACTACCTTAGCATGACGGCCGACTGTGAGCACTTC--AAAACCCAGAGGAAGTTCATAG 24502 Query 13666 TGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACC 13725 | || |||||| ||||||| ||| || ||||| || ||||| || ||| | || Sbjct 24501 AGTTCCCGCTGAGCAAAGAAGAGGCCGACTTCCCCATTGCATACTCCATGGTGGTTCATG 24442 Query 13726 ACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACT 13785 | ||||| |||| || || | || ||| | || | ||| |||| |||||| | |||| Sbjct 24441 AGAAGATTGAGAACTTTGAAAGGCTGCTGCGAGCTGTGTACACCCCTCAGAACATATACT 24382 Query 13786 GCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCA 13845 | ||||| |||||| ||||| || |||| | || ||| |||||| ||| Sbjct 24381 GTGTCCATGTGGACCAGAAGTCTCCAGAAACCTTCAAGCAGGCAGTCAGGGCCATTGCCT 24322 Query 13846 GGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGA 13905 |||||||| || || | | || | | || |||||||| | |||||| Sbjct 24321 CATGCTTCCCGAATGTCTTCTTAGCTCGTAAGTTGGTATCAGTGGTGTATGCTTCCTGGT 24262 Query 13906 GTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGA 13965 | |||||||| ||||| | ||||||| ||| || | |||||| |||| Sbjct 24261 CCAGGGTGCAGGCTGACCTGAACTGCATGGAAGACTTGATCCAGAGCCCCGTGCCATGGA 24202 Query 13966 GGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGC 14025 ||| | || ||| ||||||| ||||| || |||||||||| ||||| || | Sbjct 24201 AATACTTCCTGAACACCTGCGGGACAGACTTTCCCATCAAGACCAATGCTGAGATGGTCC 24142 Query 14026 GGGCGCTGAAG 14036 ||| || ||| Sbjct 24141 AGGCCCTCAAG 24131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657945196939520