Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value SEQ28171 149 5e-31 SEQ38160 136 3e-27 SEQ42702 91.5 1e-13 >SEQ28171 Length=118966 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 29961 TCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCC 30020 ||||||| ||| | || | |||||||| ||||||||||| || || || ||||| || | Sbjct 106829 TCATGTAGGTGTGCAGGGCATAGCTGGCAATGTTAAAGGGCACACCCAGACCCATATCTC 106770 Query 30021 CCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGG 30080 | ||||||||||| ||||| || || |||||||| | ||| || |||| ||| | || Sbjct 106769 CTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACCACATAGAACTCACAGAGGG 106710 Query 30081 CGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30140 | ||||| ||||| || ||||| ||| | ||||| ||||||||||| ||| ||||| Sbjct 106709 CATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACGTGATGA 106650 Query 30141 TGCGCCTGTCTTCTGGGTTGTTCCTGATGA 30170 | | ||||| || || ||| | |||||| Sbjct 106649 TTCTTCTGTCATCAGGATTGGTTTTGATGA 106620 >SEQ38160 Length=80719 Score = 136 bits (150), Expect = 3e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 57039 AGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 57098 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||| || || ||||||||||| ||||| || || |||||||| | | Sbjct 57099 ACGCCTAGACCCATATCACCTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACC 57158 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 || || |||| ||| | ||| ||||| ||||| || ||||| ||| Sbjct 57159 ACATAGAACTCACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 57203 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| ||||||||||||||||| || || || || |||||||| Sbjct 58666 CATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTC 58725 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || || | | | ||| ||| ||||||| ||||||| || || ||||| || Sbjct 58726 CCCTTCCTGTCGGGCAGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATC 58785 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| | || ||||| || || ||||| | |||||||| || Sbjct 58786 CCAGATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGATCC 58833 >SEQ42702 Length=42628 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 29165 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 29106 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || ||||||||||||||||||| ||||| || ||| Sbjct 29105 ATGGAGAACCAGGTTTTTCTACCCATTATCACCAGATTCTGTTTACCT 29058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405832902367284