Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value SEQ43829 111 1e-19 SEQ23137 98.7 9e-16 SEQ13217 91.5 1e-13 SEQ28820 87.8 2e-12 seq7114 87.8 2e-12 seq1037 87.8 2e-12 SEQ57164 86.0 5e-12 SEQ35906 82.4 7e-11 >SEQ43829 Length=74093 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || |||||||||||| | || || | || || || || Sbjct 42271 CGGCATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCC 42330 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||| | ||||||| || || || || || ||||| ||||| || || || || Sbjct 42331 CAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGA 42390 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||| | | || | |||||||| || ||||||| | ||| | ||||| || Sbjct 42391 CCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 42450 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || |||||||||||| | || |||| | || || |||||||||| Sbjct 42451 CAACATCCAGAAGGAGTCGACCCTGCACCTGGTCCTCCGCCTGAGGGGTGGCAT 42504 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||||||||||| | || || | || ||||| || Sbjct 42047 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 42106 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || ||||| ||||| || || || || || Sbjct 42107 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 42166 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||| || ||||||| | ||| | ||||| |||||| Sbjct 42167 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 42226 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| | || || |||| ||||| Sbjct 42227 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTCCGCCTGAGGGGCGGCAT 42276 >SEQ23137 Length=3047 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || ||| | || || || || || ||||| || Sbjct 246 ATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACGCTCGAGGTTGAACCCTCA 187 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || ||||| || || || ||||| Sbjct 186 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 127 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || ||||||| | | || | || || |||||| Sbjct 126 CAGAGACTGATCTCTGCTGGAAAGCAGCTGGAAGATGGCCCTACTTTGTCTGACTACAAC 67 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| ||| | ||| | || ||| | | || ||||| Sbjct 66 ATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTCCGTGGTGG 20 >SEQ13217 Length=170878 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || || ||||| || ||| | || Sbjct 167304 ATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACGCTTGAGGTTGAATCCTCG 167245 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || ||||| || ||||| || || || ||||| Sbjct 167244 GACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGATCAG 167185 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || ||||||| || || | || || |||||| Sbjct 167184 CAGAGACTGATCTCTGCTGGAAAGCAGCTGGAAGATAGCCGTACTTTGTCTGACTACAAC 167125 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||||| |||||||| ||| | ||| | || ||| Sbjct 167124 ATTCAGAAGGAGTCCACCCTTCATCTTGTGTTG 167092 >SEQ28820 Length=113666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || ||| | || || || || || ||||| || Sbjct 62477 ATGCAGATTTTTGTGAAGACCCTGATGGGGAAGACCATCACGCTCGAGGTTGAACCCTCG 62418 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || ||||| || || || ||||| Sbjct 62417 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 62358 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || ||||||| | || | || || |||||| Sbjct 62357 CAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 62298 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||||||||| ||| | ||| | || ||| Sbjct 62297 ATTCAAAAGGAGTCTACCCTTCATCTTGTGTTG 62265 >seq7114 Length=58683 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAA--GTGGAACC- 27043 ||||||||| ||||||||||| ||||| |||||| | || ||||||||| || || || Sbjct 1113 CATGCAGATCTTTGTAAAAACCCTGACAGGCAAGACCATCACTCTTGAAAGGTCGAGCCC 1054 Query 27044 -GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102 || || | || ||| ||||| || || |||||||| |||||||| ||||| | Sbjct 1053 AGTGACACACCATCAAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTG 994 Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT--TCCGA 27160 | || || | | |||| ||| ||||| | |||| || | | || || || || Sbjct 993 ACCAGAAGAGGCTGATATTCGCTGGCAAGAAGCTGGAGGATGG--CCACATTTTGTCTGA 936 Query 27161 TTACAACATTCAAAAGGAGTCGAC 27184 |||||||| | || ||||| || Sbjct 935 CTACAACATCAAGAAAGAGTCCAC 912 >seq1037 Length=126922 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || || ||||| || ||| | || Sbjct 82411 ATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACGCTTGAGGTTGAATCCTCG 82470 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || ||| | ||| | || ||||| Sbjct 82471 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAAGAATATCTCCTGATCAG 82530 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || ||||||| | || | || || |||||| Sbjct 82531 CAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 82590 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||||||||| ||| | ||| | |||||| Sbjct 82591 ATTCAAAAGGAGTCTACCCTTCATCTTGTTTTG 82623 >SEQ57164 Length=103104 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || || || | | ||||| || Sbjct 21300 ATGCAGATTTTTGTGAAGACCCTTACAGGGAAGACCATCACGCTCAAGGCTGAACCCTCA 21359 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || ||||| || || || ||||| Sbjct 21360 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 21419 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || ||||||| || | || | || || |||||| Sbjct 21420 CAGAGACTGATCTCTGCTGGAAAGCAGCTGGAAGATAGCTGTACTTTGTCTGACTACAAC 21479 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||| | ||| | || ||| | | || ||||| Sbjct 21480 ATTCAGAAGGAGTCCACCCTTCATCTTGTGTTGAGACTCCGTGGTGG 21526 >SEQ35906 Length=62346 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || || || || || ||||| || Sbjct 33249 ATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACACTCGAGGTTGAACCCTCG 33308 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || ||||| || || || |||| Sbjct 33309 GACACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCGG 33368 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 ||| | | || | || || || || ||||||| | || | || || || ||||| Sbjct 33369 CAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGC-CGTGCTTTGTCTGACTACAA 33427 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||||||||||||||| ||| | ||| | || ||| Sbjct 33428 CATTCAAAAGGAGTCCACCCTTCATCTTGTGTTG 33461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434394176543040