Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value SEQ84242 138 4e-28 >SEQ84242 Length=328 Score = 138 bits (152), Expect = 4e-28 Identities = 208/294 (71%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 40139 ACGTACCGGATGACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCA 40196 |||||| |||| ||||||||||| || || | || |||||||||||| | ||| |||| Sbjct 314 ACGTACTGGATCACCTCGCCGCGGCGGTCCTGGCA--GAAGTCGATGTCGAAGTCCGGCA 257 Query 40197 TGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGA 40256 | || ||||| || || || ||||| |||||||| | | | | || || |||| Sbjct 256 TCGAGACGCGTTCCGGATTGAGGAAGCGCTCGAACAGCAACGCAAAGCGCATCGGGTCGA 197 Query 40257 GGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGAC 40316 |||||||||| || ||||||||||||| || || ||||||| || || || | Sbjct 196 GGTCGGTGATGGTCAGCACCCAGGCGACCAGCGAGCCCGCACCCGAGCCGCGGCCCGGTC 137 Query 40317 CGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGG 40376 ||||| | ||| | | |||| ||||| ||||||||| | |||| ||| |||||| Sbjct 136 CGACCGGAATGCCCTGCGCCTTCGCCCATTTGATGAAGTCCGACACGATCAGAAAGTAGC 77 Query 40377 ACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGT 40430 || | | ||| || |||| | ||||| |||| | ||| |||||| || Sbjct 76 CCGCGTATTTCATGCGGGTGATGACGTCGAGCTCGAAGGCAAGCCGCTTGCTGT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160222723343298