Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value SEQ84242 131 5e-26 >SEQ84242 Length=328 Score = 131 bits (144), Expect = 5e-26 Identities = 195/275 (71%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 39046 ACGTACCGGATCACGTCGCCACGGCGA--CGGTCATCGAAGTCGATGTCCACGTCGGGCA 39103 |||||| ||||||| ||||| ||||| | | || |||||||||||| | ||| |||| Sbjct 314 ACGTACTGGATCACCTCGCCGCGGCGGTCCTGGCA--GAAGTCGATGTCGAAGTCCGGCA 257 Query 39104 TGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCA 39163 | ||||| || || || || ||||| |||||||| | | | | | || ||||| | Sbjct 256 TCGAGACGCGTTCCGGATTGAGGAAGCGCTCGAACAGCAACGCAAAGCGCATCGGGTCGA 197 Query 39164 GGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGC 39223 |||||||||| || | | ||| |||||||||| || | |||||||| || || | Sbjct 196 GGTCGGTGATGGTCAGCACCCAGGCGACCAGCGAGCCCGCACCCGAGCCGCGGCCCGGTC 137 Query 39224 CGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACG 39283 ||||| | ||| | | |||||||||| ||||||||| | |||| || ||||| Sbjct 136 CGACCGGAATGCCCTGCGCCTTCGCCCATTTGATGAAGTCCGACACGATCAGAAAGTAGC 77 Query 39284 ACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39318 || | | ||| || |||| | ||||| |||| Sbjct 76 CCGCGTATTTCATGCGGGTGATGACGTCGAGCTCG 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159532314816114