Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value SEQ84242 127 7e-25 >SEQ84242 Length=328 Score = 127 bits (140), Expect = 7e-25 Identities = 196/278 (71%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 39479 ACGTACCGGATCACGTCGCCACGGCGA--CGGTCATCGAAGTCGATGTCCACGTCGGGCA 39536 |||||| ||||||| ||||| ||||| | | || |||||||||||| | ||| |||| Sbjct 314 ACGTACTGGATCACCTCGCCGCGGCGGTCCTGGCA--GAAGTCGATGTCGAAGTCCGGCA 257 Query 39537 TGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCA 39596 | |||||||| || || || ||||| |||||||| | | | | | || ||||| | Sbjct 256 TCGAGACGCGTTCCGGATTGAGGAAGCGCTCGAACAGCAACGCAAAGCGCATCGGGTCGA 197 Query 39597 GGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGC 39656 |||||||||| || | | ||| |||||||||| || | ||||| || || || | Sbjct 196 GGTCGGTGATGGTCAGCACCCAGGCGACCAGCGAGCCCGCACCCGAGCCGCGGCCCGGTC 137 Query 39657 CGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACG 39716 ||||| | || | | |||||||||| ||||||||| | |||| || ||||| Sbjct 136 CGACCGGAATGCCCTGCGCCTTCGCCCATTTGATGAAGTCCGACACGATCAGAAAGTAGC 77 Query 39717 ACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTAG 39754 || | | ||| || |||| | ||||| |||| || Sbjct 76 CCGCGTATTTCATGCGGGTGATGACGTCGAGCTCGAAG 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160056513883050