Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value SEQ71543 100 2e-16 >SEQ71543 Length=216 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 125018 TCTGGGTACTTTTAATTCTAGCGTGCCTACACGTGTCGTAAAGCTGCGCTCATAATAGCC 125077 ||| || ||||||||||| || || || ||||| |||||||| ||||| |||||||| Sbjct 216 TCTAGGCACTTTTAATTCAAGTGTACCCACACGAGTCGTAAAATCTCGCTCGTAATAGCC 157 Query 125078 ATTTCGTTGACTTTGTCGGTTTTCTGTTCGTTCATATTCTTTTGCTTGAATAT 125130 |||| |||||| || || |||||| ||||||||| || | |||||||||| Sbjct 156 GTTTCTTTGACTCTGACGACTTTCTGATCGTTCATAGTCATCGGCTTGAATAT 104 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 120933 AAGAGATTCAAAGCATTATTGAATATTCTGTAAAGGATGACGTTTCTAAAAATATTTTAA 120992 ||||| ||||||| ||||||||| |||| ||||| ||||| || |||||||| ||| ||| Sbjct 2 AAGAGGTTCAAAGTATTATTGAACATTCGGTAAAAGATGATGTATCTAAAAACATTCTAA 61 Query 120993 CAACGGTATTTAATCAACTAATGGAAAATCAACG 121026 | || | || |||||| | |||||||||||||| Sbjct 62 CCACTATTTTCAATCAATTGATGGAAAATCAACG 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408118213500389