Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value SEQ28171 161 9e-35 SEQ38160 93.3 4e-14 >SEQ28171 Length=118966 Score = 161 bits (178), Expect = 9e-35 Identities = 155/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 || |||||||||||||| ||| | | ||| || |||||||| || ||||| || |||||| Sbjct 106631 AATCCTGATGACAGAAGAATCATCACGTGTGCCTGGAACCCAAAAGATCTTCCCCTGATG 106690 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639 || || || || ||||| ||||||| | ||||| || | |||||| |||||||| ||| Sbjct 106691 GCACTGCCTCCTTGCCATGCCCTCTGTGAGTTCTATGTGGTGAATGGAGAGCTGTCTTGC 106750 Query 34640 CAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTAC 34699 ||||| || || | || ||||| ||||| | || ||||| || |||||||| || || Sbjct 106751 CAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGTGTGCCCTTTAACATTGCCAGCTAT 106810 Query 34700 GCTCTGCTCACGTACATGA 34718 || |||| ||| ||||||| Sbjct 106811 GCCCTGCACACCTACATGA 106829 Score = 161 bits (178), Expect = 9e-35 Identities = 155/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 6627 TCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTC 6686 ||||||| ||| |||| || || || |||||||| || ||||| || | ||||| |||| Sbjct 106829 TCATGTAGGTGTGCAGGGCATAGCTGGCAATGTTAAAGGGCACACCCAGACCCATATCTC 106770 Query 6687 CCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGG 6746 | || | || || |||||||| |||||||| |||||| | || ||||| | ||||||| Sbjct 106769 CTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACCACATAGAACTCACAGAGGG 106710 Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806 ||||| || || || |||||||| || ||||| || |||||||| || ||| | | || Sbjct 106709 CATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACGTGATGA 106650 Query 6807 TCCTTCTGTCATCAGGGTT 6825 | |||||||||||||| || Sbjct 106649 TTCTTCTGTCATCAGGATT 106631 >SEQ38160 Length=80719 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| || ||||||||||| || || || ||||||| ||| || |||| Sbjct 58676 TAGTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGT 58735 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | | ||| ||| | |||||| |||||||||||||| | || |||||||| || Sbjct 58736 CGGGCAGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGATTCTC 58795 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || || || || | || |||| Sbjct 58796 ACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGG 58829 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || || || || ||| ||| |||| |||||||| || | ||||||| Sbjct 58829 CCACAAATGCTAAAGAACTGTCCTCCAAGGGAGTGAGAATCTGGGATGCCAATGGGTCTC 58770 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 ||||||| |||||| | ||| ||| | | || |||| || ||| ||||||| || | Sbjct 58769 GAGACTTCTTGGACAGCCTGGGATTCTCTGCCCGACAGGAAGGGGACCTGGGCCCAGTTT 58710 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || ||||| || || || Sbjct 58709 ATGGTTTCCAGTGGAGGCATTTTGGAGCAGACTA 58676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447722092519440