Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value SEQ24951 156 3e-33 SEQ15873 122 7e-23 SEQ28171 89.7 4e-13 SEQ38160 87.8 1e-12 >SEQ24951 Length=79824 Score = 156 bits (172), Expect = 3e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| |||||||| || ||||| |||||||| |||||| |||| || || Sbjct 48667 ATTGTGACATGGCAGAAGAAGAAAGCTGTGAGCCCAGAGAACATGATTACTTACAGCAAA 48608 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 ||| |||||||| || ||||| || || | ||| | | | ||||| |||||||| ||| Sbjct 48607 ACCCATGGGGTTGTGGTCCAGCCTGCCTATAGAGACAGAGTAAACATTACTGAGCTGGGA 48548 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 || ||||| | || |||||||||||||| ||| |||||||||| || ||||||| | Sbjct 48547 CTCTGGAACACGAGCATCACCTTCTGGAACACCACAGTGGATGATGAGGGCTGCTACATG 48488 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 ||| | || || || ||||| ||||||||| | || |||| || || || ||||| Sbjct 48487 TGTCTCTTCAATACCTTTGGTTCTGGGAAGGTCTCGGGAACAGCTTGCCTCACCCT 48432 >SEQ15873 Length=26994 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || |||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 1629 GTGGTGGAGGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 1688 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 |||||||| || ||||||||||| |||||||| || | || | |||| || ||||| Sbjct 1689 TTTGGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAT 1748 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 1749 ATCGCCCTGTGGATGACTGA 1768 >SEQ28171 Length=118966 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 118573 TAGCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGG 118632 |||||||| | ||||| || |||||||||||||| ||| |||| |||||||| | ||| Sbjct 106809 TAGCTGGCAATGTTAAAGGGCACACCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGG 106750 Query 118633 CAAGAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACC 118692 ||||| ||||| || || | ||||| |||| || | | || || |||||||| || Sbjct 106749 CAAGACAGCTCTCCATTCACCACATAGAACTCACAGAGGGCATGGCAAGGAGGCAGTGCC 106690 Query 118693 AT 118694 || Sbjct 106689 AT 106688 >SEQ38160 Length=80719 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | || ||||||||| | || || || Sbjct 57039 AGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 57098 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || |||||||| || |||| |||||||| | |||||||| ||||| || || | Sbjct 57099 ACGCCTAGACCCATATCACCTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACC 57158 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| |||| || | | || || |||||||| |||| Sbjct 57159 ACATAGAACTCACAGAGGGCATGGCAAGGAGGCAGTGCCAT 57199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413989705180828