Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value SEQ28171 167 2e-36 SEQ38160 152 4e-32 SEQ42702 91.5 1e-13 >SEQ28171 Length=118966 Score = 167 bits (184), Expect = 2e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 29733 TCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCC 29792 ||||||| ||| | || | |||||||| |||||||||||||| || || ||||| || | Sbjct 106829 TCATGTAGGTGTGCAGGGCATAGCTGGCAATGTTAAAGGGCACACCCAGACCCATATCTC 106770 Query 29793 CTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGG 29852 ||||||||||||| |||||||| || |||||||| | ||| || |||| ||| | || Sbjct 106769 CTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACCACATAGAACTCACAGAGGG 106710 Query 29853 CATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGA 29912 ||||||| ||||| || ||||| || | ||||| ||||||||||||||| ||||| Sbjct 106709 CATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACGTGATGA 106650 Query 29913 TGCGCCTGTCTTCTGGGTTGTTCCTGATGA 29942 | | ||||| || || ||| | |||||| Sbjct 106649 TTCTTCTGTCATCAGGATTGGTTTTGATGA 106620 >SEQ38160 Length=80719 Score = 152 bits (168), Expect = 4e-32 Identities = 132/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||| Sbjct 57039 AGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 57098 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||| || |||||||||||||| |||||||| || |||||||| | | Sbjct 57099 ACGCCTAGACCCATATCACCTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACC 57158 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 || || |||| ||| | ||||||||| ||||| || ||||| || Sbjct 57159 ACATAGAACTCACAGAGGGCATGGCAAGGAGGCAGTGCCATCAG 57202 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||||||| || || | | | ||| Sbjct 58688 AAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTCGGGCAGAGAAT 58747 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| ||||||| || || ||||| |||||||| | || ||||| | Sbjct 58748 CCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGATTCTCACTCCCTTGGAG 58807 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || ||||| | |||||||| || Sbjct 58808 GACAGTTCTTTAGCATTTGTGGATCC 58833 >SEQ42702 Length=42628 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 29165 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 29106 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||||||||||||||||||| ||||| |||||| Sbjct 29105 ATGGAGAACCAGGTTTTTCTACCCATTATCACCAGATTCTGTTTACCT 29058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405685875357322