Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value SEQ41689 122 7e-23 SEQ39859 122 7e-23 seq6333 122 7e-23 SEQ19583 102 7e-17 SEQ32083 95.1 1e-14 SEQ18817 82.4 7e-11 >SEQ41689 Length=266122 Score = 122 bits (134), Expect = 7e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || ||||| || | ||| || || | || || |||||||| ||| || ||||||| || Sbjct 191685 GTGAAAACAGACACTCAGATAGCTGTTCCGTCTGGGTGCTATGGAAGAGTAGCTCCACGA 191744 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||||| ||||| | || ||||| || || || || || ||||| ||||| ||| || Sbjct 191745 TCTGGCTTGGCTGCAAAGCACTTCATAGATGTAGGAGCTGGTGTCATAGAGGAAGATTAC 191804 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAGTA-TAAAAAA 31950 | |||||| ||||| ||||| |||||||||||||| ||| | | | | ||||||| Sbjct 191805 AAAGGAAATGTTGGTGTTGTGCTGTTTAATTTTGGA-AAAGAGAAGTTTGAAGTAAAAAA 191863 Query 31951 GGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 || ||| | || || ||||| ||||| ||| Sbjct 191864 AGGTGATTGAGTTGCGCAACTCATTTGTGAA 191894 >SEQ39859 Length=70141 Score = 122 bits (134), Expect = 7e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || ||||| || | ||| || || | || || |||||||| ||| || ||||||| || Sbjct 42013 GTGAAAACAGACACTCAGATAGCTGTTCCGTCTGGGTGCTATGGAAGAGTAGCTCCACGA 42072 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||||| ||||| | || ||||| || || || || || ||||| |||||| ||| || Sbjct 42073 TCTGGCTTGGCTGCAAAGCACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGATTAC 42132 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAGTA-TAAAAAA 31950 |||||||| ||||| ||| | |||||||||||||| ||| | | | | ||||||| Sbjct 42133 AGAGGAAATGTTGGTGTTGCGCTGTTTAATTTTGGA-AAAGAGAAGTTTGAAGTAAAAAA 42191 Query 31951 GGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 || ||| | || | ||||| ||||| ||| Sbjct 42192 AGGTGATCGAGTTGTGCAACTCATTTGTGAA 42222 >seq6333 Length=87340 Score = 122 bits (134), Expect = 7e-23 Identities = 126/164 (77%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 31767 CGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTC 31826 |||| || ||||| || ||||| || || | ||||| |||| || ||| | |||||| Sbjct 59412 CGCT-GTGAAAACTGACATTCAGATAGCTGTTCCTTCTGGGTTCTGTGGAGAAGTAGCTC 59354 Query 31827 CTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAG 31886 | ||||||| ||||| || || ||||| || ||| | || || ||||| |||||| || Sbjct 59353 CACGATCTGGCTTGGCTGTAAAGCACTTCATAGACATAGGAGCAGGTGTCATAGATGAAG 59294 Query 31887 ACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAA 31930 | ||||||||||| ||||| ||||| |||||| ||||||| || Sbjct 59293 ATTATAGAGGAAATGTTGGCTTTGTGCTGTTTACTTTTGGAAAA 59250 >SEQ19583 Length=87321 Score = 102 bits (112), Expect = 7e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || ||||| || ||||| || || | ||||| ||||||| ||| || ||||||| | Sbjct 34439 GTGAAAACAGACATTCATATAGCTGTTCCTTCTGGGTGCTGTGGAAGAGTAGCTCCACAA 34380 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 |||| ||||| | || | ||| || || || || || |||| |||| | ||| | | Sbjct 34379 TCTGCCTTGGCTGCAAAGCTCTTCATAGATGTAGGAGCTGGTGCCATAGTTGAAGATTGT 34320 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAA 31930 |||||||| ||||| ||||| |||||||||||||| || Sbjct 34319 AGAGGAAATGTTGGCCTTGTGCTGTTTAATTTTGGAAAA 34281 >SEQ32083 Length=112626 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| || || || |||||||| | |||||||| | || | ||| || Sbjct 102559 TCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCGGGCATCAGTCCCCGCTTCTTG 102618 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||| ||||| || ||||| || || ||||| || Sbjct 102619 AGCCAGAATATCGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACCGCTGCAAAGGCC 102678 Query 4692 AC 4693 || Sbjct 102679 AC 102680 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 ||| |||||||| || || || || ||||||||||| ||||| ||||| || ||||| || Sbjct 103729 AATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTG 103788 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||| || || || || | || ||||| ||||||||||| | | ||||| Sbjct 103789 AAAGCCATAGAAACAACGGGCCTCTGTGACTTGAACTTCTTGGCTAAATC 103838 >SEQ18817 Length=114269 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 4252 CAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAA 4311 ||||| || || || || |||| || || |||||||| ||||| |||||||| |||| Sbjct 106833 CAAATCGCTGATACTCAGAAACTCTTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAA 106892 Query 4312 TATTTTCCATAAAATCAAACGGATT 4336 | ||||||||||||||||| ||||| Sbjct 106893 TGTTTTCCATAAAATCAAAGGGATT 106917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426547729575191