Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value SEQ28171 149 5e-31 SEQ38160 136 3e-27 >SEQ28171 Length=118966 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27227 TCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCC 27286 ||||||| ||| | || | |||||||| ||||||||||| || || || ||||| || | Sbjct 106829 TCATGTAGGTGTGCAGGGCATAGCTGGCAATGTTAAAGGGCACACCCAGACCCATATCTC 106770 Query 27287 CCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGG 27346 | ||||||||||| ||||| || || |||||||||| || || |||| ||| | || Sbjct 106769 CTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACCACATAGAACTCACAGAGGG 106710 Query 27347 CGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 27406 | ||||| ||||| || ||||| ||| | ||||| ||||||||||| ||| ||||| Sbjct 106709 CATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACGTGATGA 106650 Query 27407 TGCGCCTGTCTTCTGGGTTGTTCCTGATGA 27436 | | ||||| || || ||| | |||||| Sbjct 106649 TTCTTCTGTCATCAGGATTGGTTTTGATGA 106620 >SEQ38160 Length=80719 Score = 136 bits (150), Expect = 3e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 57039 AGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 57098 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||| || || ||||||||||| ||||| || || |||||||||| Sbjct 57099 ACGCCTAGACCCATATCACCTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACC 57158 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 || || |||| ||| | ||| ||||| ||||| || ||||| ||| Sbjct 57159 ACATAGAACTCACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 57203 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| ||||||||||| ||||| || || || || |||||||| Sbjct 58666 CATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTC 58725 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || || | | | ||| ||| ||||||| ||||||| || || ||||| || Sbjct 58726 CCCTTCCTGTCGGGCAGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATC 58785 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| | || ||||| ||| || ||||| | |||||||| || Sbjct 58786 CCAGATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGATCC 58833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369072953637437