Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value SEQ39859 127 3e-24 SEQ13259 111 2e-19 SEQ81609 105 9e-18 SEQ32083 84.2 3e-11 >SEQ39859 Length=70141 Score = 127 bits (140), Expect = 3e-24 Identities = 234/337 (69%), Gaps = 7/337 (2%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935 ||| ||||| ||||| ||| | | | ||||| || |||| || | ||| ||||| | Sbjct 42303 TCCCGTGGAGCCAAAACCTCCTGTGCCCCTTTCGGTGTCATCCAGTGCTTGAACTTCTTC 42244 Query 45936 CAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTAT 45995 | || |||||| | || |||| | | || ||||| | | || |||||| | |||| Sbjct 42243 TAAGTCTGGATAAAAAATCCGTTCACAAATGAGTTGCACAACTCGATCACCTTTTTTTAC 42184 Query 45996 TTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTC 46055 |||||| | ||||||||| ||| | ||| || |||| | ||||| |||||||| Sbjct 42183 TTCAAACTTCTCTTTTCCAAAATTAAACAGCGCAACACCAACATTTCCTCTGTAATCTTC 42124 Query 46056 ATCTATTACTCCCCCTCCCACATCGAT-ACCT--TTTAGAGACAGTCCAGATCTAGGAGC 46112 |||||| || || |||| ||||| || | | ||| || || ||||||| ||||| Sbjct 42123 ATCTATGACACCAGCTCCTACATCTATGAAGTGCTTTGCAGCCAAGCCAGATCGTGGAGC 42064 Query 46113 TATTCTTCCATAACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATCTCCT 46172 || ||||||||| || || | || ||| || | |||||||| | |||| || Sbjct 42063 TACTCTTCCATAGCACCCAGACGGAACAGCTATCTGAGTGTCTGTTTTCA-CAAT-GGCT 42006 Query 46173 TTCTCCA--GGAGGGATAGTATAGTCGTACGCACTGT 46207 ||||||| || || | ||||| || || ||||||| Sbjct 42005 TTCTCCATGGGTGGTGTGGTATAATCATAAGCACTGT 41969 >SEQ13259 Length=38172 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| ||||| || || |||||| || |||| || || ||||| || | Sbjct 24150 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCAATATGGATGT 24091 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| ||||||||||| ||||| ||||| ||||| ||||| || | || |||| Sbjct 24090 TGAGAGACTGGCTTTGATCGATAAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTCT 24031 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| |||||||| | ||| || | | ||| || | ||||| |||| Sbjct 24030 TCTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 23980 Score = 100 bits (110), Expect = 4e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 77354 TGATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCA 77412 |||||| | |||||||||||| || || | || || || || ||||||||||| |||| Sbjct 18352 TGATCCCTCATATGTTTCATAGGGGCCATACTCCTTG-GCGAGGTCACAACTCGCCTCCA 18294 Query 77413 ATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTAT 77472 |||||||||||||| ||||| || |||| |||||| || || ||||| || | Sbjct 18293 GGGCTCCGTAATAAATCGTTTCAAAGATCTGCTTATTCAGCAACTGGGCTTCGGGGCTCT 18234 Query 77473 CAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAG 77532 |||| || || | | || || |||||||||| || || || ||||| ||||| | Sbjct 18233 CAAAGGGGTACCTCATCAAGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGG 18174 Query 77533 GTCTATGTCTCTTATTGGA 77551 | | || | ||||| || Sbjct 18173 GCCGGTGGCGTTTATTTGA 18155 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| | ||||||||||| ||| Sbjct 8387 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACCTCTCAGAAAGTAGGTTG 8328 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| || | || || || || ||||| || || | || | ||||| | Sbjct 8327 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATGCCCACAGACACCCTCATCAGC 8268 Query 78519 ATATGCTGAGGTCTTTC 78535 |||||||| |||||||| Sbjct 8267 ATATGCTGTGGTCTTTC 8251 >SEQ81609 Length=287 Score = 105 bits (116), Expect = 9e-18 Identities = 191/276 (69%), Gaps = 9/276 (3%) Strand=Plus/Minus Query 48389 TTTTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAAT 48448 |||||| || ||||| || ||||||||||| ||||| |||| |||| ||||| Sbjct 284 TTTTTCGTTTTCGTCTTTTACATAAGTATCTATCAAAAGCGAATACGTTTCACTATGAAT 225 Query 48449 ATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGT 48508 |||||| || || || || || || ||| || | ||||| | || || || | Sbjct 224 ATTTTCCATCATGATTTGGAAACCATAGAAAAATTTAGCTTCGGCATATTGCACTTCATT 165 Query 48509 -ACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTA 48567 ||||||| ||||| | ||| ||||| || ||||| || ||| || ||||| || | Sbjct 164 AACAAAAT-TCTCAGCAAGATTTTCATTAACGATTCCGTCTGAAGCTGCGAAAAAGGCAA 106 Query 48568 ATACATGTTTAATAAAATATTTTTCGT-----TGGAAGTCAGTTTATTCCAGTCATTGAT 48622 | |||||| ||||| || || | | || | | |||||||||||||| | Sbjct 105 GAATATGTTTTATAAAGTAACGCTCATCATCATTTAACTTA--TTATTCCAGTCATTTAA 48 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAA 48658 ||||| ||| | || | |||||||||||||||||| Sbjct 47 ATCTTGTGACAAGTCAATTTCTTCAGCTGTCCAAAA 12 >SEQ32083 Length=112626 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/139 (74%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA----GACATAACTCCCATTT 47850 ||| |||||| |||| || | |||| ||| ||| |||| ||||| || ||||| Sbjct 100938 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTTGACATCACACCCATCC 100996 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 | || || || || || || ||||| || || || || || ||||| | ||| ||||||| Sbjct 100997 TCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTT 101056 Query 47911 CCATAAAATCAAATGGATT 47929 |||| || ||||||||||| Sbjct 101057 CCATGAAGTCAAATGGATT 101075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693831489645280