Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value SEQ39859 118 2e-21 SEQ81609 105 1e-17 SEQ13259 105 1e-17 SEQ18817 102 1e-16 SEQ32083 84.2 3e-11 >SEQ39859 Length=70141 Score = 118 bits (130), Expect = 2e-21 Identities = 232/337 (69%), Gaps = 7/337 (2%) Strand=Plus/Minus Query 44363 TCCCGTTGATCCAAATCCTTGAGCGTCTCTATTGGTACTATCTAGAGATTGTACTTCCTC 44422 |||||| || ||||| ||| | | | || | ||| ||| || | ||| ||||| || Sbjct 42303 TCCCGTGGAGCCAAAACCTCCTGTGCCCCTTTCGGTGTCATCCAGTGCTTGAACTTCTTC 42244 Query 44423 TAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCTGTATTTAT 44482 || || |||||| | || |||| | | || ||||| | | || ||||||| | |||| Sbjct 42243 TAAGTCTGGATAAAAAATCCGTTCACAAATGAGTTGCACAACTCGATCACCTTTTTTTAC 42184 Query 44483 TTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAATCTTC 44542 || ||| | ||||||||| ||| | || || |||| || || || |||||||| Sbjct 42183 TTCAAACTTCTCTTTTCCAAAATTAAACAGCGCAACACCAACATTTCCTCTGTAATCTTC 42124 Query 44543 ATCTATTACTCCACCTCCCACATCAAT-ACCT--TTTAGAGAAAGACCCGATCTAGGCGC 44599 |||||| || ||| |||| ||||| || | | ||| || | || |||| || || Sbjct 42123 ATCTATGACACCAGCTCCTACATCTATGAAGTGCTTTGCAGCCAAGCCAGATCGTGGAGC 42064 Query 44600 TATTCTTCCATAACAGAATTTTGGCATAGACATACGAATATCTGTTTTAATCAACCGTCT 44659 || ||||||||| || || | || || || | |||||||| | ||| | || Sbjct 42063 TACTCTTCCATAGCACCCAGACGGAACAGCTATCTGAGTGTCTGTTTTCA-CAA-TGGCT 42006 Query 44660 TTCTCCA--GGAGGGATAGTATAATCGTAAGCACTGT 44694 ||||||| || || | |||||||| |||||||||| Sbjct 42005 TTCTCCATGGGTGGTGTGGTATAATCATAAGCACTGT 41969 >SEQ81609 Length=287 Score = 105 bits (116), Expect = 1e-17 Identities = 182/261 (70%), Gaps = 5/261 (2%) Strand=Plus/Minus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 ||||| ||||| |||||||| ||||| |||| |||| |||||| ||||| || Sbjct 271 TCTTTTACATAAGTATCTATCAAAAGCGAATACGTTTCACTATGAATATTTTCCATCATG 212 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA-CAAAATCGTTC 47009 || || || || || ||| || | ||||| | | || || || || |||||| | | Sbjct 211 ATTTGGAAACCATAGAAAAATTTAGCTTCGGCATATTGCACTTCATTAACAAAATTCT-C 153 Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 || | ||| ||||| || ||||| || ||| || ||||| || | | |||||| || Sbjct 152 AGCAAGATTTTCATTAACGATTCCGTCTGAAGCTGCGAAAAAGGCAAGAATATGTTTTAT 93 Query 47070 AAAATATTTTTCATCGGTAGTCAGTTTATT---CCAGTCATTGATATCTTTTGATATATC 47126 ||| || ||||| | | | ||||| ||||||||| | ||||| ||| | || Sbjct 92 AAAGTAACGCTCATCATCATTTAACTTATTATTCCAGTCATTTAAATCTTGTGACAAGTC 33 Query 47127 TACTTCTTCAGCTGTCCAGAA 47147 | ||||||||||||||| || Sbjct 32 AATTTCTTCAGCTGTCCAAAA 12 >SEQ13259 Length=38172 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| ||||| || || |||||| || | || || || ||||| || | Sbjct 24150 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCAATATGGATGT 24091 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| ||||||||||| ||||| ||||| ||||| ||||| || | || |||| Sbjct 24090 TGAGAGACTGGCTTTGATCGATAAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTCT 24031 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| |||||||| | ||| || | | ||| || | ||||| |||| Sbjct 24030 TCTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 23980 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | |||||||| ||||| || ||||| | ||||||||||| ||| Sbjct 8387 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACCTCTCAGAAAGTAGGTTG 8328 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| | || || ||||| || ||||| || |||| || | ||||| | Sbjct 8327 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATGCCCACAGACACCCTCATCAGC 8268 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 8267 ATATGCTGTGGTCTTTC 8251 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || |||||||| ||||| ||||| |||||||| || ||||| || || || || | || Sbjct 21439 TGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTCGTGTAAGGCTCAATGGAC 21380 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || ||||| |||| || ||||||||||| ||||| ||||| || || | | ||| || Sbjct 21379 TCGTTGTTCCCCAGGATCTGAGCAGTTGAGGCAGTGGGCATCGGGGCAATAAGTAAGCTG 21320 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 21319 TTTCTTATACCAT 21307 Score = 96.9 bits (106), Expect = 5e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 75949 TGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAA 76008 |||||| | ||||||||| || | || | || | || || || ||||||||||| | Sbjct 18352 TGATCCCTCATATGTTTCATAGGGGCCATACTCCTTGGCGAGGTCACAACTCGCCTCCAG 18293 Query 76009 CGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATC 76068 || ||||||||||| ||||| || |||| |||||| || || ||||| | || || Sbjct 18292 GGCTCCGTAATAAATCGTTTCAAAGATCTGCTTATTCAGCAACTGGGCTTCGGGGCTCTC 18233 Query 76069 AAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGG 76128 ||| || || | | || || ||||||||||| || || || ||||| ||||| || Sbjct 18232 AAAGGGGTACCTCATCAAGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGG 18173 Query 76129 TCTATGTCTCTTATTGGA 76146 | || | ||||| || Sbjct 18172 CCGGTGGCGTTTATTTGA 18155 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 76511 TATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACAC 76570 |||||| |||||||| ||||||||||| ||||||| |||||||| ||||| |||||| Sbjct 15697 TATAACTTCTCAAATTCCTCTCCCCAAACTTCATCCAGCCCAGGACACTCATTTGGACAC 15638 Query 76571 ATCAATGACCACTC 76584 |||| |||||| || Sbjct 15637 ATCAGTGACCAGTC 15624 >SEQ18817 Length=114269 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 ||||||| || || || | || || ||||| || || |||||||| || || | ||| | Sbjct 113859 CTTCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCT 113918 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || || |||||||| ||||| || ||||||||||| || || | Sbjct 113919 TTAGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 113978 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 113979 CCACCACTCTTTCCCC 113994 >SEQ32083 Length=112626 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/139 (74%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG----TGACATAACTCCCATTT 46339 ||| ||||| |||| || | |||| ||| ||| ||| |||||| || ||||| Sbjct 100938 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTTGACATCACACCCATCC 100996 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 | ||||| || ||||| || ||||| || || || || || ||||| | ||| ||||||| Sbjct 100997 TCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTT 101056 Query 46400 CCATAAAATCAAACGGATT 46418 |||| || ||||| ||||| Sbjct 101057 CCATGAAGTCAAATGGATT 101075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712075073432640