Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value SEQ84242 141 3e-29 >SEQ84242 Length=328 Score = 141 bits (156), Expect = 3e-29 Identities = 207/291 (71%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 40131 ACGTACCTGATCACGTCGCCCCGTCG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCA 40188 |||||| |||||| ||||| || || || | || |||||||||||| | ||| |||| Sbjct 314 ACGTACTGGATCACCTCGCCGCGGCGGTCCTGGCA--GAAGTCGATGTCGAAGTCCGGCA 257 Query 40189 TGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCA 40248 | || ||||| || || || ||||| |||||||| | | | | | || ||||| | Sbjct 256 TCGAGACGCGTTCCGGATTGAGGAAGCGCTCGAACAGCAACGCAAAGCGCATCGGGTCGA 197 Query 40249 GGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTC 40308 |||| |||||| || ||||||||||||| || ||| ||||||| || || |||| Sbjct 196 GGTCGGTGATGGTCAGCACCCAGGCGACCAGCGAGCCCGCACCCGAGCCGCGGCCCGGTC 137 Query 40309 CGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGG 40368 ||||| | ||| | | |||| ||||| ||||||||| | |||| ||| |||||| Sbjct 136 CGACCGGAATGCCCTGCGCCTTCGCCCATTTGATGAAGTCCGACACGATCAGAAAGTAGC 77 Query 40369 ACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTACTGAAGCTGCTTGC 40419 || | | || || |||| | ||||| |||| | |||| |||||| Sbjct 76 CCGCGTATTTCATGCGGGTGATGACGTCGAGCTCGAAGGCAAGCCGCTTGC 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159957427474056