Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq4625 174 2e-38 SEQ15013 145 1e-29 >seq4625 Length=35579 Score = 174 bits (192), Expect = 2e-38 Identities = 210/286 (73%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| || || | |||| ||||||||||| | || | |||| |||| Sbjct 16268 AAGGGACAGCCCTTTACATTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATC 16209 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || || | ||||| || || ||||| |||||||||||| || ||||||||| Sbjct 16208 TTAAAACCTGCTTCTCCTCCAAACGTGCTTGGCTTCCAGTACTGAGGAGAGCAGATGGGA 16149 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || || | || | ||| |||| |||||| Sbjct 16148 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCGAAG 16089 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 ||||||| ||||| ||||||||||||| | | | ||||||||||| || |||| | Sbjct 16088 ATGGCGTCTGGACGAGGCTTTTCCACCAGCAGGGCAGGGTACAGCTCCATGGCATCGATG 16029 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || ||||| ||||| | || |||| || || ||||| ||||||| Sbjct 16028 TCACCGTAGAGGGCTTTCAGCTCGGTGGCCATTTCCTTCTCTCCTG 15983 Score = 132 bits (146), Expect = 7e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9254 TGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACA 9313 |||||||||||| ||||||| ||| || || || || || || || || ||||||| Sbjct 14752 TGGTCTGGAACAACCGCTCGTCCTCCCACTCGGGGTGCTCCTGCTTGAGCACGTCGCACA 14693 Query 9314 CCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAA 9373 | | |||||| |||| ||||||||||| || |||||||| || || || |||||||| | Sbjct 14692 CTCGGTTGTGCTCCCGCAGCCAGATAGTAGCATACATCATCAGACCCGGCACCAGGCCGA 14633 Query 9374 AAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGT 9433 | | || || || ||||| | |||| || ||||| | | ||| || |||||||| | Sbjct 14632 AGACTTCCTGGCCCACAGCGAACCGCAGGTGCTCGGGGATGTGGGGCGGGTAGATCATCT 14573 Query 9434 GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTGA 9486 ||||| |||| | || | ||| || |||| || || || || | |||| Sbjct 14572 CGGCCTGGGTGTCTCTCACTGTGGGAGGGTACACCTCTCCATCGATGAGCTGA 14520 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | |||||||| || || | | || ||||| || | ||| | Sbjct 12854 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATTGGCTACTGGAGGAAGGACCCTGGTA 12795 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || |||||||| |||||||| ||||||||| | ||| | |||| | | ||||| | Sbjct 12794 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGTTCTTGTAACCATAGTGCACATTGTAAGTT 12735 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || || ||||||||||||| ||||| |||| Sbjct 12734 GGTGGACTGTCAATCAAATGTGATCTGGCTGA 12703 >SEQ15013 Length=36067 Score = 145 bits (160), Expect = 1e-29 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||||| ||| ||||| || || ||||| ||||| |||||||||||| |||| || Sbjct 4324 TTGACGAGGTTGAAGCCCACCTCACCACCGAACGTGCTCGGCTTCCAGTACTCCGGCGAA 4383 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| ||| | | |||||| |||||||| ||||||||||| | ||| | || ||| Sbjct 4384 CAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAACGGAGCCCCAATCTCTATCATACTC 4443 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || ||||||| |||||| || |||||||| | | || | ||| | ||||| | Sbjct 4444 TCCCCAAAGATGGAGTTGGGCTGGCACTTTTCCAGGAGCAGCCCCGGGTAGAACTCCAAA 4503 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| ||| || || || || | || ||||| || |||| ||||||| Sbjct 4504 GCGTCGATGTCGCCATACAGCTCCTGTAACTCCGCAGCCATTTCCTCCTCTCCTG 4558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716012721510080