Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value SEQ23565 150 4e-31 seq1037 141 2e-28 SEQ43829 131 4e-25 SEQ25611 107 5e-18 SEQ11330 105 2e-17 SEQ31117 98.7 2e-15 SEQ12768 95.1 3e-14 >SEQ23565 Length=11847 Score = 150 bits (166), Expect = 4e-31 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||||||||| | || || ||||| |||||||| ||||| | ||| || | Sbjct 9956 CAGATCTTCGTGAAAACCTTAACTGGTAAAACCATCACCCTAGAGGTCG--AGCCCAGTG 9899 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| |||||| |||||||| ||||| ||||| || ||||||| Sbjct 9898 ACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGC 9839 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 9838 AGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 9779 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 9778 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGA 9738 >seq1037 Length=126922 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || || || || || || ||||| || ||||| ||| ||| ||| Sbjct 82414 CAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACGCTTGAGGTTGAATCCTCGGAC 82473 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || ||| |||| |||| || ||||| Sbjct 82474 ACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAAGAATATCTCCTGATCAGCAG 82533 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || ||||| ||||| |||||||| | ||| | | || || ||| | Sbjct 82534 AGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAACATT 82593 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| || || || || |||||||||||||||||| Sbjct 82594 CAAAAGGAGTCTACCCTTCATCTTGTTTTGAGACTC 82629 >SEQ43829 Length=74093 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || ||||||||||| || || || || || || |||||| | ||||| | ||| || | Sbjct 42278 CAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTCG--AGCCCAGTG 42335 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||| ||||| || || || ||||||| Sbjct 42336 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAGC 42395 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 42396 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 42455 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 42456 TCCAGAAGGAGTCGACCCTGCACCTGGT 42483 >SEQ25611 Length=18984 Score = 107 bits (118), Expect = 5e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 177957 ATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGAC 178016 ||||| |||||||| ||| |||||||||||| || ||||| | ||||| |||| Sbjct 14187 ATCACACTCGAGGTTGAACCCTCAGACACCATAGAAAACGTAATGGTTAAGATCAAGGAT 14128 Query 178017 AAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGAT 178076 || |||||||| ||||| || ||||| | || | || || || || ||||| ||| || Sbjct 14127 AAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGTTTTTTGCTGGTAAGCAGCTGGAATAT 14068 Query 178077 GGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 | | ||| | | || || ||| | ||||| || || || || |||||||| |||||| Sbjct 14067 TGCCGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGA 14008 Query 178137 CT 178138 || Sbjct 14007 CT 14006 >SEQ11330 Length=6390 Score = 105 bits (116), Expect = 2e-17 Identities = 124/166 (75%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||||| || ||||| || || ||| Sbjct 5952 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTTGA--GCCCAGTG 6009 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||| | ||||| ||||| || ||||||| Sbjct 6010 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACGAGGAAGGCATCCCACCTGACCAGC 6069 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 | | || || ||||| || || ||||| || ||||| |||| || Sbjct 6070 AGAGGCTGATATTCGCTGGCAAGCAGCTGGAGGATGGCCGGACCCT 6115 >SEQ31117 Length=51645 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 177966 GAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAG 178023 |||||||| || ||| ||||||| |||||||| || ||||||||||| || |||| Sbjct 13403 GAGGTGGA--GCCCAGTGACACCATTGAGAACGTGAAGGCCAAGATTCAGGATAAGGAAG 13346 Query 178024 GAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 | ||||| || |||||||| | | || ||| ||||| || ||||| |||||||| | | Sbjct 13345 GCATCCCACCAGACCAGCAGAGGCCTAGCTTTGCCGGCAAGCAGCTGGAAGATGGCTGCA 13286 Query 178084 CTCTTGCCGATTATAACGTC 178103 | ||| | ||||| ||| || Sbjct 13285 CCCTTTCTGATTACAACATC 13266 >SEQ12768 Length=14605 Score = 95.1 bits (104), Expect = 3e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| |||| || | |||| || || |||||||||||| ||| | ||||| Sbjct 8723 CAGATTTTTGTGATGACCTTTTCAGGGAAGACCCTCACCCTCGAGGATGAACAC-CAGAC 8665 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || || ||| |||| ||| | || ||||||| |||| || ||||| Sbjct 8664 ACTAAAGA-AATGTAAAAGCCGAGATCCAGAATAAGAAAGGAATTTCTCCTGATCAGCAG 8606 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || | ||| |||||||| ||||| | || || ||| | Sbjct 8605 AGACTGATCTTTGCTGGTTAGCAGACGGAAGATGGCCATACTCTGTCTGACTACAACATT 8546 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| || || || || |||||||| ||||||||| Sbjct 8545 CAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTC 8510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202244025085838