Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value SEQ43829 145 7e-30 SEQ23565 129 5e-25 seq6726 102 8e-17 SEQ11330 93.3 4e-14 SEQ45421 84.2 2e-11 SEQ28820 82.4 7e-11 SEQ13217 82.4 7e-11 >SEQ43829 Length=74093 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||||| |||||||| |||||||| | || || Sbjct 42483 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 42424 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || ||||| | ||| ||||| | ||||| | ||||||||| | Sbjct 42423 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGG 42364 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | ||||| || | ||| ||||||| || || || || Sbjct 42363 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTG 42304 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| ||||| ||||||||||||||| Sbjct 42303 CCGGTCAGGGTCTTCACGAAAATCTGCATG 42274 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | || || | ||||| ||||| || ||||||||| ||||| |||||||| Sbjct 42274 GCCGCCCCTCAGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 42215 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || |||||||||||||| || ||||| | ||| ||||| | ||| Sbjct 42214 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 42155 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || | ||||||||| ||| || ||||| | | ||||| || | |||||| Sbjct 42154 AATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCAC 42095 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || || || || ||||| ||||| ||||| || ||||| || Sbjct 42094 CTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 42044 >SEQ23565 Length=11847 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| |||||||| |||||||| | || || Sbjct 9295 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 9354 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| ||||| | ||| | || ||||||||| | Sbjct 9355 AGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 9414 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || ||| ||| | | | ||||| || | ||| ||||||| || || || || Sbjct 9415 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 9474 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || || |||||||| Sbjct 9475 CCTGTCAGGGTCTTCACAAAGATCTGCAT 9503 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| |||||||| |||||||| | || || Sbjct 9523 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 9582 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| ||||| | ||| | || ||||||||| | Sbjct 9583 AGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 9642 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || ||| ||| | | | ||||| || | ||| ||||||| || || || || Sbjct 9643 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 9702 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || || |||||||| Sbjct 9703 CCTGTCAGGGTCTTCACAAAGATCTGCAT 9731 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || ||| ||| ||||| ||||| |||||||| |||||||| | || || Sbjct 9067 ACCAGGTGTAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 9126 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| ||||| | ||| | || ||||||||| | Sbjct 9127 AGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 9186 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || ||| ||| | | | ||||| || | ||| ||||||| || || || || Sbjct 9187 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 9246 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || || |||||||| Sbjct 9247 CCTGTCAGGGTCTTCACAAAGATCTGCAT 9275 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| |||||||| |||||||| | || || Sbjct 9751 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 9810 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| ||||| | ||| | || ||||||||| | Sbjct 9811 AGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 9870 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || ||| ||| | | | ||||| || | ||| ||||| | || || |||||| Sbjct 9871 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTTTTA 9930 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || ||||| |||||||| Sbjct 9931 CCAGTTAAGGTTTTCACGAAGATCTGCAT 9959 >seq6726 Length=145916 Score = 102 bits (112), Expect = 8e-17 Identities = 157/223 (70%), Gaps = 16/223 (7%) Strand=Plus/Minus Query 41638 GCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAG 41697 |||||| || || | |||||| ||||| ||| ||| ||||| ||||| ||| | || || Sbjct 106657 GCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGCCAGACAG 106598 Query 41698 GGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAAC 41757 |||||| |||| || ||||||||||| ||||||| ||| | ||| ||||| | | Sbjct 106597 GGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAATAGCAGCCTCTGCTGGTCAG-GTCTTG 106539 Query 41758 GCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTC 41817 | | |||| || ||| || | ||| | ||||| || | ||| ||||| Sbjct 106538 GAT---CTTGGCCTTGACATTCT-------CGATG-----GTGTCACTGGGCTCAACCTC 106494 Query 41818 CACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGC 41860 | || || || || |||||||| ||||| ||||| |||||| Sbjct 106493 AAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGC 106451 >SEQ11330 Length=6390 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 ||||| || ||||| || | || || ||||||||||| ||||||||||| | ||| ||| Sbjct 6124 TAGTCAGACAGGGTCCGGCCATCCTCCAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGG 6065 Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTC 41806 || | || | || |||| ||| ||| || ||| | | | ||||| || Sbjct 6064 TCAGGTGGGATGCCTTCCTCGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTG 6005 Query 41807 GACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | ||| ||||| | || || || || |||||||| ||||| ||||| ||||||||||| Sbjct 6004 GGCTCAACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 5946 >SEQ45421 Length=309261 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41652 ACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 |||||| |||| ||| || ||||| ||||| |||| || ||||||| | | || | Sbjct 257124 ACACCATGGGCAGGGTGGACTTTTTCTGGATGTTGAAGTCAGACAGGGTGCACCCATCCT 257065 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 | ||||||||||| ||| ||||||| | ||| ||||| | | | || |||||| | Sbjct 257064 CCAGCTGCTTGCCAGCGGATATCAGCCTCTGCTGGTCAGGTGAGATGCCTTCCTTG-GCT 257006 Query 41772 TGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 || | || |||| | | || |||| || | ||| ||||| || || || Sbjct 257005 TGGATCTTGGCTTTGGCATTCTCCATGGTGTTACTGGGCTCAACCTCACAAGTGATGGTC 256946 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||||||| ||||| | ||| ||||||||| Sbjct 256945 TTGCCCGTCAGGGTCTTCATGAAGATCTGCATG 256913 >SEQ28820 Length=113666 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||| ||||| || || |||||| |||||||| ||||| || | || || | || Sbjct 62266 AACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCT 62325 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || |||||||| || || || ||||| | ||| || || | |||| | ||||| ||| Sbjct 62326 TCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 62385 Query 41771 ATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| || ||| | | |||||| | || ||||| | ||| || || Sbjct 62386 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTC 62445 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||| |||| ||||| || ||||||||||| || Sbjct 62446 TTCCCCATCAGGGTCTTCACAAAAATCTGCATCTT 62480 >SEQ13217 Length=170878 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||| ||||| || ||| ||||||||||||||| ||||| || | || || || Sbjct 167093 AACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCTATCT 167152 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || |||||||| || || | ||||| | ||| || || | |||| | ||||| || Sbjct 167153 TCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCT 167212 Query 41771 ATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| || ||| | | |||||| || || ||||| | ||| || || Sbjct 167213 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACCTCAAGCGTGATGGTC 167272 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| || ||||| || ||||||||||| || Sbjct 167273 TTCCCCGTAAGGGTCTTCACAAAAATCTGCATCTT 167307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461746767652400