Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq297 327 1e-84 seq117 87.8 2e-12 >seq297 Length=62275575 Score = 327 bits (362), Expect = 1e-84 Identities = 607/885 (69%), Gaps = 8/885 (1%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || ||||| |||| || || || || || ||||| ||||| || ||||| Sbjct 25392874 ACTCCCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTTCCTTCTAGT 25392815 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCT--GAAAATATTTTAGAGTACCCCA 16781 || |||||||||||||| ||||| ||||| || |||||| || | | | |||| Sbjct 25392814 GAAATATTCTCCATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGTTAA--AACCCA 25392757 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 | || || | || || || ||||| || || || || ||| || ||| |||| Sbjct 25392756 GCTCCAGCATAAGCCTGTCGGCCACAAACTCGATGTACTGCTTCATCAAGGTGCAATTCA 25392697 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || || || || || || || || || | || |||||||| ||||| | Sbjct 25392696 TCCCGATGAGCTTCACAGGCAGGGCCTCTGTGAGGAACTCCTGCTCTATCCTGACCGCGT 25392637 Query 16902 CCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCA 16961 |||| || |||| | ||| || || | ||| || || || ||||||| Sbjct 25392636 TGGTAATTATTTCTTTTACTCTCTGCTCCGAGGGCTTGTGTACCAGGTGCTTGAACATCA 25392577 Query 16962 GACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCA 17021 | || || || || || || | ||||| |||||||| |||||||| || |||||||| | Sbjct 25392576 GGCAGGCAAAGTCACAGTGCAGACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTAA 25392517 Query 17022 ACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGA 17081 || |||||| ||| |||||||| | ||| ||||| | || || || |||||||||| Sbjct 25392516 GGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGA 25392457 Query 17082 ATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTAC 17141 | || || || || | || || || | | |||||| | ||||| || ||||||| | Sbjct 25392456 AGATTCCTTCTACCGCAGCGAAGGCCACAACTCGTTCTCCATACGTAGCCTCTTTGTCCC 25392397 Query 17142 GAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCT 17201 |||||| | |||| || || || | ||| | ||| ||| || || ||||| | Sbjct 25392396 CAATCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTCTCAATGGCGT 25392337 Query 17202 TAAATA-AT-TTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTA 17259 | || | || |||||||| | | | || | || || || || || || || ||||| Sbjct 25392336 TGAAGAGATATTCTCTTTCTTTGGAA--TCTTTAATGTAAGTGTCAATAAGGAGACTGTA 25392279 Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGC 17319 ||||||||||||||||||||||||||| || || || || || || || ||||| || | Sbjct 25392278 CATTTCGGAGTGTATGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGT 25392219 Query 17320 TATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 | ||||||||| | ||||| ||| | | || || || || ||||| || ||||| Sbjct 25392218 GACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGC 25392159 Query 17380 GGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCA 17439 || || || |||| | ||| || |||| | | || || ||| | ||| | ||| Sbjct 25392158 CGCAAAGAAGGCCAGAACATGAGATATAAAATGTCTCTCATCTGGTTTCAGAGCTTCCCA 25392099 Query 17440 GTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTT 17499 || || | ||| ||||| | ||||| || |||| |||||||| ||| | || || Sbjct 25392098 GTGCTGAATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCAGCTTT 25392039 Query 17500 TTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAAC 17544 || ||||| | ||| ||||||| ||||| ||||| || ||||| Sbjct 25392038 CTTGTACATCTGCCAGATATCATGGTATTCGATGGGAAAGACAAC 25391994 >seq117 Length=147991367 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || || || || || |||||||||||||||||||||||||||||||| || || Sbjct 43886762 ATGTAAGTGTCAATAAGGAGACTGTACATTTCGGAGTGTATGTTCTCCATGGCAATTTGG 43886703 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || || || ||||| || | | ||||||||| Sbjct 43886702 AAGCCATAGAAACAGCGGGCCTCTGTGACTTGAACTTC 43886665 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| ||||| || || |||||||| | || |||||| ||| ||||||| Sbjct 43887779 CCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCT 43887720 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || || | || || | Sbjct 43887719 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACCGCAGCGAAGG 43887660 Query 17106 CGATTAATCGTTC 17118 | | | |||||| Sbjct 43887659 CCACAACTCGTTC 43887647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517539421799400