Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq166 87.8 1e-12 >seq166 Length=122095297 Score = 87.8 bits (96), Expect = 1e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| | ||| | |||| ||| ||||| || || | | ||||| ||||| || | || Sbjct 121921696 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTTTATGTGGTGAAT 121921637 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 || || | || ||||| | |||||| | || || |||||||| || || || || ||| Sbjct 121921636 GGGGAGCTGTCTTGCCAGCTTTACCAGCGGTCAGGAGATATGGGTCTGGGTGTGCCCTTC 121921577 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACT 19132 |||||||| | ||||| || || |||||||| | || ||| | || || || Sbjct 121921576 AACATTGCCAGCTATGCTCTGCTGACCTACATGATTGCACATATCACGGGCCT 121921524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399499350147975