Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq232 524 9e-144 seq297 434 1e-116 seq1 131 2e-25 seq117 114 2e-20 seq129 102 1e-16 seq174 82.4 9e-11 >seq232 Length=115493446 Score = 524 bits (580), Expect = 9e-144 Identities = 1467/2242 (65%), Gaps = 47/2242 (2%) Strand=Plus/Minus Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 ||||| || ||||| || || ||| |||||| | || | || ||| ||||| | Sbjct 76911775 CTTGTTCAGAGTGAAGTGGATTGGATTAACAGCGGGTCTTGTCCTTAAATAATACATCCG 76911716 Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG 52917 || |||| ||| | |||| || ||||| |||||||| ||||||||| || | || Sbjct 76911715 AGTCTTTAAACCCTGCTTCCAACCATAAAAGTGCATACTAGTTAGTTTGCCGTAGTTGGG 76911656 Query 52918 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 52977 || || |||||||| || | ||| || ||||||| || ||| | || || || || || Sbjct 76911655 CTCAGCAATATGGATGTTTAAAGACTGGCTTTGATTGACGAAAACGCCTCTCTCAGCTGC 76911596 Query 52978 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATC 53037 ||| || | | ||||| || | |||||||| || || ||| | | | |||| | | Sbjct 76911595 CATCTTGAGAACAGTCTTCTGAGAGATTTCCCACATGGTCTTACAGAGTTGCTTCAGGTT 76911536 Query 53038 TTCTGGAAGGTTTG-TAT--TCTGAATAGATCCACCATCTACCATAATCCTATTCTTGAT 53094 || |||| | || || ||||||| || ||| | | ||| ||| || || Sbjct 76911535 ATCAGGAATTTCTGGTAAGCTCTGAATGGAGCCATTGCAGGCAGTGATCTGATTTTTCAT 76911476 Query 53095 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 53154 ||| |||||||| || ||| || | | || | || | | ||||| || | || Sbjct 76911475 CTCTTCATTCCACAAACCCTGCTCAGTAAGATCTTTCAGTAAGCGAGGATTCACAATCTG 76911416 Query 53155 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 53214 ||||||||| ||||| ||||| | |||||| || ||||||| || | || | |||| Sbjct 76911415 AAATTCTCCTGACAAGACTCTGCAAGTGTAGATGCTACTGGTGTAAGCCTCAATGGACTG 76911356 Query 53215 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 53274 |||||| | || ||| ||||||||| | ||||| ||||| || || | | |||||| || Sbjct 76911355 ATTATTCCTCAGAATCTGAGCAGTTAAAGCAGTAGGCATTGGGGCAATAAGTAAACTGTT 76911296 Query 53275 TCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG 53334 ||| | |||||| || || || | || ||| | | ||| | ||| || || | || Sbjct 76911295 TCTTATACCGTACTTTGCAATCTTCCCCTTGAGAAGCTTCCAGTCCCACAGGTCTGTAGG 76911236 Query 53335 TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGT 53394 | ||| || |||||||| || ||| | ||||| |||| || Sbjct 76911235 AATAACATTCCACATATCATACTGAAGAATACCTTTGCTGACTGGAGATCCCTCATACGT 76911176 Query 53395 ATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAAT 53454 | || || || | | || ||||| ||||| || || || | || || |||||||| Sbjct 76911175 TTTGTCGGGGCCATATTCCTTGGCTAGGTCACAGCTGGCTTCCAGGGCTCCATAATAAAT 76911116 Query 53455 GGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAA 53514 |||||| ||||| | |||||||| || ||||| |||| ||| Sbjct 76911115 GGTTTCAAAGATTTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA-------------- 76911070 Query 53515 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 53574 | || || || ||||||| ||||| || ||||| || || || | ||| ||||| Sbjct 76911069 --GGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGTGTTTATT 76911012 Query 53575 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCT 53634 || | | || ||||||||||| || || || ||||| || |||||||| | ||| Sbjct 76911011 TGATAAGTGTGCCTCTGGAATAGGGTAGTAGTTTATATCAATTATTTTATTCGGATTTTG 76910952 Query 53635 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---TGTCCATCTATTAC 53691 |||||| ||||| || || |||||| ||| ||| | ||| | | | || Sbjct 76910951 GACAATGACTTTAGTGACTTCTGCCAGTTTCTCAAAGTCATACGTATGTTCTGGTGTGAC 76910892 Query 53692 AAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG--CA 53749 ||||||| | || | ||| |||| ||||||| || ||||||| || | || Sbjct 76910891 CTACATGTTGAGAGCCAGAGAAGCCAAGTTACAAATTGCAACCTCATCTTCACTGGTGCA 76910832 Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 | |||||| || || || | || || ||||||||||| | || ||||| | Sbjct 76910831 ACTC----TATCTCCGTACACAGGTGGCTGCATTTGATGGTTCCCAGGTTCTGTTGGCTG 76910776 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 ||||| || ||| || || || || ||| |||| ||||| || || ||| || Sbjct 76910775 CTCTTCGGGTCACAGAAGTCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGCCTGAGAC 76910716 Query 53870 TCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCT-CT 53928 | || || || | ||| | || | ||| | | ||| | | || || Sbjct 76910715 CCAATGATGGCGTACCAAAGCTGCTGAACTTTTCACA-ACTTTTCAGACACGACCCTGCT 76910657 Query 53929 T-TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 53987 | ||||| | ||| || || ||||| |||||| |||| | ||||| ||||||| Sbjct 76910656 TCTCGTAACTTTCATATAACTTCTCGAACTCCTCTCCCTAAACCTCGTCCAGACCAGGAC 76910597 Query 53988 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 54047 | |||| |||||||||| |||| || || | || ||||| ||||| ||||||| Sbjct 76910596 ACTCATTGGGACACATCAGTGACCGGTCCTGGTTAGTCTCTACTCGCTTCATGAAGAGAT 76910537 Query 54048 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 54107 || |||| ||| || | || ||||| | | | ||||| || || ||||| |||| Sbjct 76910536 TTGGGATCCGAAGTGCGAAGAAGAGATCCCACGCTTGCTGTTCTTCCTTGCCTGTGTTCT 76910477 Query 54108 TTTTAAGATCGAGGAACGCCATAATATC-AGAA------TGCCACGGTTCCAAGTATATG 54160 | || | || |||||| | | || || || ||||| || | || ||| || Sbjct 76910476 TCTTCAAGTCAAGGAACTCAAAGATGTCTAGGTGGTTGGTGCCAAGGCTTCAGGTAAATA 76910417 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | || || || |||||||| || ||||| | ||| | ||| ||||| |||| Sbjct 76910416 GCAAATGCCCCCGGGCGCTTGTTTCCACCTTGATCCACGTAAC-AGCTGTGTTGTTATGT 76910358 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 ||||||| | ||| | || || ||| || | || ||||| | || ||||| ||| Sbjct 76910357 ACTCTCAGCGTTGACACAAGACAATTAGAATTGCTGTTAGTCCCAGCAATGTAGCTACCA 76910298 Query 54281 CTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 |||| |||||| | | | | | || || ||||| || ||||| || || | Sbjct 76910297 ATGGCCCGAATACAATTCACGCA-ACACTGATTCCCCCAGCAGACTTAGAAATCAAGGAA 76910239 Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400 | | || | |||||||| || ||||| || || ||| | |||| | | || ||| Sbjct 76910238 TACTGCTTCAGAGTATCATAAATTCCCTCAATGCTGTCACCTTTCATACTCAAGAGGAAA 76910179 Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460 |||| ||||| || | | | | || || ||||| || | | ||||| || || ||| Sbjct 76910178 CAGCGAGACAGCTGTGGGC-AGTGGTCCCAGCATTGAAGAGAATCGGAGAGGCTTGAGTA 76910120 Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGA 54520 || || || ||||||||||||||||| || || || || | || ||||| || ||| Sbjct 76910119 AATCACTTCTCAGAAAGTAGATTGTATGTTTCAATTGCAGCATCAATATCTTCTTTGTGA 76910060 Query 54521 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 54580 || || || | || | ||| ||||| ||||| |||| |||| | | || | || Sbjct 76910059 ATCCCCACAGATACCCTCATCAACATATGCTGCGGTCGTTCAGCCACTTTTCCACTGATC 76910000 Query 54581 TTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 54640 |||| ||| || || ||||| || ||||||||||| |||||||| || | | Sbjct 76909999 TTCAACAAATATGACCGTTCCAGTGTCTTAAAACCAAAGTAGTTGTAAACGAAATTCCAG 76909940 Query 54641 TCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCA-TGGTAAT 54699 || || ||||| | || || || | ||| |||| |||| | || | || | | Sbjct 76909939 TCATAGATAATGGCAGAATTCAGGTGATCTTTATTAGCCATAACAATGTCAAGTGCTGA- 76909881 Query 54700 ACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTT 54759 ||| | | || ||||||| | | | || | ||||| | ||||| | | ||||| Sbjct 76909880 ACTGGCCACCATGGGAGAATATCTGCTGTTGTGTGGATTCATGTAGTTGTAGAGATCCTC 76909821 Query 54760 CATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 54819 |||| | || | || | ||| |||||||||||||| | || || || || || || || Sbjct 76909820 CATCCCATCGCCGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTTGC 76909761 Query 54820 GGCTAGAATGGCATAATCCGGATG--TTGTGTAGTA--CAAGTGGCTGCTATTTCGGCTG 54875 || || |||||||| || || || | | | ||| || ||||| ||| | || || | Sbjct 76909760 TGCCAGGATGGCATAGTCAGGGTGCTTCGCTTCGTAGTCAGGTGGCAGCTGTCTCAGCAG 76909701 Query 54876 TCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 54935 ||| ||||||| ||| || || || || ||| | | || |||||| | || ||||| | Sbjct 76909700 CCAGGGTGTCCAGTTCCACTGTGGTGACCCCACTGTGTAGGCCTTGGCTTACTTTCATGG 76909641 Query 54936 CTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAG 54995 || | | |||| | | | || | || | |||||||| | ||| || || | Sbjct 76909640 TGATCTGAGCAGGAGCAACAAAGTCCATATTGAGCCCATAACAGAGTTTCTGGATTCGTG 76909581 Query 54996 ATGTGATTTTATCAAACATGAC 55017 |||| ||||| |||||||| || Sbjct 76909580 ATGTAATTTTGTCAAACATAAC 76909559 >seq297 Length=62275575 Score = 434 bits (480), Expect = 1e-116 Identities = 660/935 (71%), Gaps = 10/935 (1%) Strand=Plus/Minus Query 23789 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCT--TGAGACATAACTCCCATTTT 23845 ||| |||||| |||| || | ||| ||| ||| || | ||||| |||||||| | Sbjct 25392923 TTAGAAGTCAGCATCCAAGGTGAAAGAATTTTCTGTCGAATTTGACATTACTCCCATCCT 25392864 Query 23846 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 23905 ||||| || || || || || || || || || ||||| ||||||| ||| ||||| || Sbjct 25392863 CTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTTCCTTCTAGTGAAATATTCTC 25392804 Query 23906 CATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAA 23965 |||||| || ||||||| || || | || | ||||| |||| || || | Sbjct 25392803 CATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGTTAAAACCCAGCTCCAGCATAAG 25392744 Query 23966 TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 24025 || || || |||||||| || || ||||||| |||||||| || || || || Sbjct 25392743 CCTGTCGGCCACAAACTCGATGTACTGCTTCATCAAGGTGCAATTCATCCCGATGAGCTT 25392684 Query 24026 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 24085 || || || ||| | || || || || || || || |||||||| || || || Sbjct 25392683 CACAGGCAGGGCCTCTGTGAGGAACTCCTGCTCTATCCTGACCGCGTTGGTAATTATTTC 25392624 Query 24086 TCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCGAAA 24143 | ||||| | | || || || ||| | || || ||||||| || || || Sbjct 25392623 TTTTACTCTCTGCTCCGAGGGCTTGTGTACCAGG--TGCTTGAACATCAGGCAGGCAAAG 25392566 Query 24144 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 24203 || ||||| |||||||| ||||| ||||| | ||| |||||||| || || || ||||| Sbjct 25392565 TCACAGTGCAGACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTAAGGCCCGGCATC 25392506 Query 24204 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 24263 || || || || || ||||| ||||| || ||||| || ||||||||||| ||||||||| Sbjct 25392505 AGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCT 25392446 Query 24264 ACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACTTT 24320 || || || ||||| | || || ||||||||| | | | |||| ||||| Sbjct 25392445 ACCGCAGCGAAGGCCACAACTCGTTCTCCATACGTAGCCTCTTTGTCCCCAATCCAACGC 25392386 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 24380 ||||| || |||||||| || ||||||||||||||||| || || || |||||||| Sbjct 25392385 AAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTCTCAATGGCGTTGAAGAGATAT 25392326 Query 24381 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 24440 | | |||| || |||||||| || || ||||| | ||||| |||||||| || || Sbjct 25392325 TCTCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCGGAGTGT 25392266 Query 24441 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || ||||| ||||| || || |||||||| | ||||| || | || |||||| Sbjct 25392265 ATGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAACTTCT 25392206 Query 24501 ATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 24560 | |||||| || | || || ||||| ||||| || ||||| || ||||| || ||| Sbjct 25392205 TGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCCGCAAAGAAGGCC 25392146 Query 24561 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCT 24620 | ||||| |||||||| | | || |||||| | || | ||| | | ||||| Sbjct 25392145 AGAACATGAGATATAAAATGTCTCTCATCTGGTTTCAGAGCTTCCCAGTGCTGAATATCC 25392086 Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 || || | ||||| || || | |||||||| || ||||| || || || ||||| | | Sbjct 25392085 TTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTGC 25392026 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 ||||| ||||| |||| || ||||| | ||| || Sbjct 25392025 CAGATATCATGGTATTCGATGGGAAAGACAACGAA 25391991 >seq1 Length=282763074 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| |||||||| || |||||||| || || || | Sbjct 167557814 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTGTAAGGCTCAATG 167557755 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 167557754 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 167557695 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | |||||| Sbjct 167557694 CTGTTTCTTATACCGTA 167557678 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | || ||||| ||||| |||||||| || ||||||||||||||| Sbjct 167546974 GTCCCAGCATTGAAGAGAGTCGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGTAGATTG 167546915 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || || || || || | || ||||| || ||||| || || | || | ||| ||| Sbjct 167546914 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 167546855 Query 54545 ATGTGCTGAGGTCTTTCA 54562 |||||||| ||||||||| Sbjct 167546854 ATGTGCTGTGGTCTTTCA 167546837 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 167560806 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTGGGCTCAGCGATATGGATGT 167560747 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 167560746 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 167560687 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 167560686 TCTGAGAGATTTCCCACACGGTCTTATAGAGCTGCTTCAGGTCCTCAGGAA 167560636 Score = 87.8 bits (96), Expect = 2e-12 Identities = 206/307 (67%), Gaps = 7/307 (2%) Strand=Plus/Plus Query 21908 CCTCTATCTGTACTATCTAGAGATTGTACTTCTTTCAGTTCTGGATAATATATACGTTGA 21967 ||||| || || |||| || | ||| || || | | ||||||||| || || | Sbjct 48565194 CCTCTCTCAGTGTTATCCAGTGTTTGCACCTCCTCTAAGTCTGGATAAAGAATCCGCTCC 48565253 Query 21968 TAGATTAGCTGAGCTATTCTATCCCCCGTATTTACATTAAATGTATATTTTCCATTATTA 22027 | || ||||| || || | || || | || || | || | | ||||||| ||| Sbjct 48565254 CAAATGAGCTGCGCGATCCGGTCACCTTTTTTCACCTCGAACTTCTCTTTTCCAAAATTG 48565313 Query 22028 ATAAGAATGACTCCTATATTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCA 22087 | || | ||| || | |||||| ||||||||||||||||| |||||| |||||| ||| Sbjct 48565314 AACAGCACGACGCCGACATTTCCTCTATAATCTTCGTCTATGACACCGGCTCCTACATCT 48565373 Query 22088 AT---GCCTTTTAGGGACAGACCAGACCTAGGAGCTATTCTACCATAGCAGAACTTAGGC 22144 || | |||| | || ||||| | ||||| | ||| || ||||| ||| Sbjct 48565374 ATGAAGTGCTTTACAGCCAAGCCAGAACGTGGAGCCACTCTTCCGTAGCACCCAGAAGGA 48565433 Query 22145 ATGGACATACTAATATCTGTCTTAATTAATTGTCTTTCTCC-TGGA-GGGATAGTATAAT 22202 | | || ||| |||||||| | | | |||||||| |||| || || ||||||| Sbjct 48565434 ACAGCTATCTGAATGTCTGTCTTCA--CAAGGGCTTTCTCCATGGATGGAATTGTATAAT 48565491 Query 22203 CATAAGC 22209 |||| || Sbjct 48565492 CATAGGC 48565498 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/151 (72%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 53588 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTG 53647 |||||||||||||| || || ||||| || |||||||| || |||| |||||| ||||| Sbjct 167554281 TCTGGAATAGGATAGTAGTTTATATCAATTATTTTATTCAGATTTCGGACAATGACTTTA 167554222 Query 53648 ACCACATCCTTCAGTTTGAGAAAATCAAA---TTGTCCATCTATTACAAACATGTTCAAT 53704 || || |||||| ||| ||| | ||| | | | ||| ||||||||| Sbjct 167554221 GTGACTTCTGCCAGTTTCTCAAAGTCATACGTGTGTTCTGGTGTGACATACATGTTCAGA 167554162 Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCT 53735 || | ||| |||| |||||||| || |||| Sbjct 167554161 GCCAGAGAAGCCAAGTTACAAACCGCAACCT 167554131 >seq117 Length=147991367 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | || |||||||| || || || ||||| || || || || | Sbjct 43887779 CCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCT 43887720 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| ||||||||||| || || |||| Sbjct 43887719 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACCGCAGCGAAGG 43887660 Query 24277 CAATAAGTCTTTCTCC 24292 | | || || |||||| Sbjct 43887659 CCACAACTCGTTCTCC 43887644 >seq129 Length=145729302 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || || || || || | ||| || ||||| || || || ||||| ||||| | ||| || Sbjct 76759206 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGCCCAGGCATGAGGCCTCTCTTCTTT 76759265 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | |||||||||||||| |||||||| |||||||| || || ||||| Sbjct 76759266 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATCCCTTCTACAGCAGCGAAGGCC 76759325 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 76759326 ACCACTCTTTCCCC 76759339 >seq174 Length=112626471 Score = 82.4 bits (90), Expect = 9e-11 Identities = 91/120 (76%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 147891 ATACGAGCCGGGAAAAAGAAGATGGTTAAAAATAAAGCGAGACTATTTGAACGAGGGTTC 147950 ||| ||||| |||||| || ||| | ||| | ||| |||||||||||||||||| | Sbjct 70150438 ATATGAGCCTGGAAAACGACACTGGCTGAAAGTTAAGAAAGACTATTTGAACGAGGGGGC 70150497 Query 147951 CATGGCAGATTCTGCCGATTTAGTAGTACTAGGTGCTTACTAT-GGTAAAGGAGCAAAGG 148009 |||||| ||| | || ||| | || || || || || | |||| || || |||||||||| Sbjct 70150498 CATGGCTGATACAGCTGATCTGGTGGTTCTTGGGGCCTTCTATGGGCAAGGGAGCAAAGG 70150557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593714512448400