Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq166 91.5 1e-13 >seq166 Length=122095297 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 || |||||||||||||| ||||| |||||||||||||| || || ||||||||||| | | Sbjct 121928295 TAGTCTGCTCCAAAATGTCTCCACTGGAATCCATAAACTGGGCCCAGGTCTCCTTCCTGT 121928354 Query 97462 CTATCACAGAA-ACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAAT 97517 | || |||| |||||| | || ||| || | || ||||| ||||||||||| Sbjct 121928355 CGGGCAGAGAATCCCAAGC-TGTCCAAAAAGTCTCGGGACCCATTGGCATCCCAAAT 121928410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346779963759350