Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq297 316 2e-81 seq129 104 2e-17 seq117 98.7 9e-16 >seq297 Length=62275575 Score = 316 bits (350), Expect = 2e-81 Identities = 619/907 (68%), Gaps = 32/907 (4%) Strand=Plus/Minus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||||||||| ||| ||| | || || || | |||| ||| |||||||| |||||||| Sbjct 25392884 ATTTGACATTACTCCCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTT 25392825 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT-----TTGAACAATAGTAT 16039 |||||||| ||||||||| ||||| || ||||| ||||||| ||||| ||| | | Sbjct 25392824 TCCTTCTAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTTTGAA-AATCTTGT 25392766 Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 | | | |||| |||| || | || || |||||||| || || ||||| ||||| Sbjct 25392765 TAA----AACCCAGCTCCAGCATAAGCCTGTCGGCCACAAACTCGATGTACTGCTTCATC 25392710 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 || || ||||| || || | || ||||| | || ||||| | || | | ||| Sbjct 25392709 AAGGTGCAATTCATCCCGATGAGCTTCACAGGCAGGGCCTCTGTGAGGAACTCCTGCTCT 25392650 Query 16160 ATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTT----AA 16215 || | ||||| | | ||||| ||| ||||| | || | | ||||| || | Sbjct 25392649 ATCCTGACCGCGTTGGTAATTATTTCTTTTACT-CTCTGCT---CCGAGGGCTTGTGTAC 25392594 Query 16216 TAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAA 16275 | ||| || ||||| | || ||||| ||||| |||| || || || || || || | Sbjct 25392593 CAGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGACCCTCATCTCTGCTAATAAG 25392534 Query 16276 CTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGC 16335 || || ||||||||||| || ||||| ||||| ||||| || | ||| ||||| | || Sbjct 25392533 TTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGC 25392474 Query 16336 AAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTA 16395 ||| |||||||||||||| || ||||| || || || || || || | ||| || || || Sbjct 25392473 AAAAGAACCAGAAAAGAAGATTCCTTCTACCGCAGCGAAGGCCACAACTCGTTCTCCATA 25392414 Query 16396 CGT--TCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAG 16453 ||| || ||| | | | ||||| ||||| | || || | || ||||| Sbjct 25392413 CGTAGCCTCTTTGTCC--CCAATCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAA 25392356 Query 16454 TTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTA 16513 ||| |||| || || || || | ||| | | |||||||| |||| ||| ||||| Sbjct 25392355 GGCATTGTCTCAATGGCGTTGAAGAGATATTCTCTTTCTTTGGAATCTTTAATGTAAGTG 25392296 Query 16514 TCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAA 16573 || || || | ||| |||||||| || || || |||||||| || || || || ||||| Sbjct 25392295 TCAATAAGGAGACTGTACATTTCGGAGTGTATGTTCTCCATGGCAATTTGGAAGCCATAG 25392236 Query 16574 AAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTA 16633 || || | || || | | ||| ||||| | ||| | || | ||||| || || Sbjct 25392235 AAACAGCGGGCCTCTGTGACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTG 25392176 Query 16634 ACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTA 16693 ||||| ||||| || || ||||| || || || | || ||||||| | | || | Sbjct 25392175 ACTATGCCATCACTCGCCGCAAAGAAGGCCAGAACATGAGATATAAAATGTCTCTC---A 25392119 Query 16694 TCTG-----AAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAG 16748 |||| | || || ||||| || ||| || || | || ||||| || ||| Sbjct 25392118 TCTGGTTTCAGAGCTT--CCCAGTGCTGAATATCCTTGGAAAGGTCCACCTCCTCGGCAG 25392061 Query 16749 TCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAA 16808 ||||||| || || |||| || || ||||| | ||| || || | ||| | || |||| Sbjct 25392060 TCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATGGTATTCGATGGGAA 25392001 Query 16809 ACACAAC 16815 | ||||| Sbjct 25392000 AGACAAC 25391994 >seq129 Length=145729302 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 15884 CTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943 ||||| ||||| ||| | | || ||||||||| | | | || ||| |||| | | Sbjct 76750060 CTTTAGAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCTGCCATGACTGCAAAT 76750119 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| ||| ||||| || ||||||||||||||||| |||||||| ||||| || Sbjct 76750120 CGCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTC 76750179 Query 16004 TCCATAAAATCAAAAGGATTTTTTG 16028 |||||||||||||| ||||||| || Sbjct 76750180 TCCATAAAATCAAAGGGATTTTCTG 76750204 >seq117 Length=147991367 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | ||| || ||||||||||| || ||||| ||||| ||||| || Sbjct 43887777 TCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTG 43887718 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| || || || || || Sbjct 43887717 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACCGCAGCGAAGGCC 43887658 Query 16379 ACCAATCGCTCACC 16392 || | ||| || || Sbjct 43887657 ACAACTCGTTCTCC 43887644 Score = 96.9 bits (106), Expect = 3e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||||||||| ||| ||| | || || || | |||| ||| |||||||| |||||||| Sbjct 43889476 ATTTGACATTACTCCCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTT 43889417 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 |||||||| ||||||||| ||||| || ||||| ||||||| Sbjct 43889416 TCCTTCTAGTGAAATATTCTCCATGAAGTCAAATGGATTTT 43889376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462506478763000