Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq154 1099 0.0 seq1 141 6e-29 seq271 113 3e-20 >seq154 Length=133307652 Score = 1099 bits (1218), Expect = 0.0 Identities = 1024/1297 (79%), Gaps = 10/1297 (1%) Strand=Plus/Minus Query 107353 ATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCC 107412 ||||| |||| ||||||||||||| ||||||||||| | || | |||| ||| |||| Sbjct 76450792 ATCATGGGTGGACCCTGGGCTGCTACATGCTGCTGGCTATCATTGCCCTGAAACTGTCCC 76450733 Query 107413 TCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGC 107472 |||| || || |||||| | ||| | |||||||||| || | ||| || || || ||| Sbjct 76450732 TCAGATTGAAGTGTGATTTCGATGTCATGGATCTGGACTCAAAGGAATTTCAAAGCCAGT 76450673 Query 107473 ACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTT 107532 |||| |||||| | ||||||| | |||| |||||||||||||||| ||||||||||||| Sbjct 76450672 ACTGCAGGGACCTCCTGTACAAGACCCTGGAGCTGCCAGCAAAGAGTTCCATCAACTGTT 76450613 Query 107533 CTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAG 107592 | ||| ||| |||||||| ||| |||| ||| |||||| || || | ||||||||| Sbjct 76450612 CAGGGGTCATCCGAGGGGAACAGAAAGCGGTGACCCAGGCTCTGCTGAATAACCTGGAAC 76450553 Query 107593 TGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTG 107652 | |||| |||||| | | |||| | | | ||||| | ||| || |||||||| Sbjct 76450552 TTAAGAGGAAGCGGCAGTCCTTCACAGAGGCTGACTACCTTAGCATGACGGCAGACTGTG 76450493 Query 107653 AGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACT 107712 ||| ||||||| |||| |||||||| |||||| |||||||||| ||||||||| ||| Sbjct 76450492 AGCACTTCAAGACCCAGAGGAAGTTTATACAGGTCCCACTGAGCAAAGAAGAGGCCAACT 76450433 Query 107713 TCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGC 107772 |||||||||| ||||| |||||| | |||||||||||||| ||||||||| ||||||||| Sbjct 76450432 TCCCCATTGCGTACTCCATGGTGATTCATGAGAAGATTGAGAACTTTGAAAGGCTGCTGC 76450373 Query 107773 GAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGA 107832 |||| ||||| ||||||||||||||||||||||||| ||||| |||||| |||| | Sbjct 76450372 GAGCTGTGTACACCCCTCAGAACATATACTGTGTCCATGTGGACCAGAAGTCTTCAGAAA 76450313 Query 107833 CTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTA 107892 |||| | |||| |||| ||||||| | || |||||||||||||||||||| || | || Sbjct 76450312 CTTTTCAGCAGGCAGTCAGGGCCATTGTGTCATGCTTCCCCAATGTCTTCATAGCTAATA 76450253 Query 107893 AGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGG 107952 || |||| | ||||| ||||||||||||||||||||||| ||||| |||||||| |||| Sbjct 76450252 AGCTGGTGTCAGTGGTCTATGCCTCCTGGTCCAGAGTGCAGGCTGATCTGAACTGCATGG 76450193 Query 107953 AAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACT 108012 ||||||||||||||||| | ||||| ||| ||||| | ||||| || || |||||||||| Sbjct 76450192 AAGACTTGCTCCAGAGCCCCGTGCCGTGGGAGTACCTCCTGAACACCTGTGGGACAGACT 76450133 Query 108013 TCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACA 108072 ||||||| || |||||||||||||||||| |||||||||| | |||| || |||||| Sbjct 76450132 TCCCCATCAAAACCAATGCCGAGATGGTCAAGGCCCTCAAGCTACTGAATGGGCAGAACA 76450073 Query 108073 GTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaa----TCGCTGGAAATACCGCTAT 108128 | |||||||| |||||||| | |||| | |||| || |||||||||| |||| Sbjct 76450072 GCATGGAGTCAGAGGTACCACC----TCCACATAAAACGTTCCGTTGGAAATACCACTAT 76450017 Query 108129 GAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTA 108188 |||||| | |||||||| ||| ||||||||| |||| ||| |||||| | || || Sbjct 76450016 GAGGTGGCCGACACACTATACAGAACCAGCAAGGAGAAGACCCCGCCCCCTAACAACATA 76449957 Query 108189 CCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTA 108248 |||||||||| || |||||||| | ||||| ||||||| ||| | ||||||| ||| Sbjct 76449956 ACCATGTTCACTGGCAATGCCTACATGGTGGCTTCTCGAGACTTCATTGAACATGTATTA 76449897 Query 108249 GACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAA 108308 ||| | ||| ||| |||| | |||||||| |||||||| || || || || || Sbjct 76449896 AGTAACTCAAAAGCCCGGCAACTGATCGAATGGGTAAAAGACACTTACAGTCCTGATGAG 76449837 Query 108309 CACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCC 108368 ||||| ||||||||||| |||||||| | ||||||||||| || | ||| |||||| Sbjct 76449836 CACCTTTGGGCCACCCTCCAGCGTGCCTCATGGATGCCTGGATCAGATCCCTTGCACCCC 76449777 Query 108369 AAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAG 108428 || | | || | |||||||||| |||| || || || |||||||||| |||| ||| Sbjct 76449776 AAATTTGACCTATCAGACATGAGATCCATTGCAAGACTAACCAAGTGGCAGGACCATGAG 76449717 Query 108429 GGAGA-TGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCAT 108487 ||||| | || || |||||||||||| | | ||||| |||||||| | | |||| || Sbjct 76449716 GGAGACATTGAGAAT-GGGGCGCCTTATACGTCTTGCTCAGGAATCCACCAGCGGGCTAT 76449658 Query 108488 CTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAA 108547 ||| |||||||| | ||||||||| ||||||| || |||||||||||||||||||| || Sbjct 76449657 CTGTGTTTACGGGTCAGGGGACCTGCACTGGATACTTCAGAACCATCACCTCTTGGCCAA 76449598 Query 108548 CAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCA 108607 ||||||||| || | ||||||||| || || || ||||| ||||||| || ||||||| Sbjct 76449597 CAAGTTTGATCCAAAGGTGGATGACAATGTTCTTCAGTGTCTAGAAGAATATTTACGTCA 76449538 Query 108608 TAAGGCCATCTATGGGACTGAACTTTGAGCTGCACTG 108644 || |||||||||||||| || | |||| ||||| Sbjct 76449537 CAAAGCCATCTATGGGACCGAGTTATGAGACTCACTG 76449501 >seq1 Length=282763074 Score = 141 bits (156), Expect = 6e-29 Identities = 615/951 (65%), Gaps = 45/951 (5%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || | |||||||||| | | ||| || ||||| || || || ||||| ||| | ||| Sbjct 236581167 CCCCTTACTAAAGAAGAGGTTGGCTTTCCAATTGCATATTCCATAGTGGTTCATCATAAG 236581226 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| |||| ||| | ||| | ||| |||||||| | ||||| | Sbjct 236581227 ATTGACATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATT 236581286 Query 107808 CACGTGGAT-GTGAAGTCCCCAGAGA---CTTTCAAAGAGGCGGTCAAGGCCATTATTTC 107863 |||||||| | ||| ||||| | || || ||||| ||| |||| || Sbjct 236581287 CACGTGGACAGAAAAG----CAGAGGAATCCTTTTTAGCCGCGGTGCAGGGCATTGCATC 236581342 Query 107864 CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTC 107923 |||||| |||||||| ||||||| |||||| || || || ||||||||| Sbjct 236581343 CTGCTTTGATAATGTCTTTGTGGCCAGCCAGTTGGAGAGTGTTGTATACGCCTCCTGGAG 236581402 Query 107924 CAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGG 107981 | || | |||||||| ||||| ||| | ||| || | |||| | | ||| | ||| Sbjct 236581403 TCGGGTTAAGGCTGACCTCAACTGCATGAAGGACCTG-TACAGAA-TGAATGCAAACTGG 236581460 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| || || | || ||||| || || ||||| || || ||| Sbjct 236581461 AAGTACTTGATCAATCTTTGTGGTATGGATTTCCCTATTAAAACCAACCTGGAAATTGTC 236581520 Query 108042 CTGGCCCTCAAGATGTTGA-AGGGTAAGAACAGTATGGAGTCTGAGG---TACCTTCTGA 108097 | |||||| || | |||| || ||||| |||| ||||| | ||| | | Sbjct 236581521 AGGAAGCTCAAGTCCTTCACAGGGGAA-AACAGCCTGGAAACTGAGAAGATGCCTCCCAA 236581579 Query 108098 GTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAG 108157 ||| || | | |||||| | || || ||| ||| | | | || | Sbjct 236581580 ---CAAGGAAGAGAGGTGGAAAAAACGATACACGGTTGTGGACGG---GAAGCTGACAAA 236581633 Query 108158 CA----AGATG--AAGG---ACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGC 108208 || || || |||| | ||||| | | | || | || | || |||| | || Sbjct 236581634 CACTGGAGTTGTCAAGGCGCAGCCTCCAC-TCAAAACT--CCTCTCTTTTCAGGCAGCGC 236581690 Query 108209 CTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAA 108267 |||||| |||| | || | | | ||| |||| | || || || || | ||| Sbjct 236581691 CTATTTCGTGGTCACTAGGGAATATGTAGGCTATGTGCTGGAAAATAAAAATATTCAAAA 236581750 Query 108268 GACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTC 108327 | | | ||||||| | ||||| || ||||| || || ||||||||||||| | | Sbjct 236581751 GT-TCATGGAATGGGCACAGGACACATACAGCCCGGATGAGTTCCTCTGGGCCACCATCC 236581809 Query 108328 AGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCA 108383 | | | ||| || | | ||||| ||| | || ||||| |||||| || | || Sbjct 236581810 AAAG-GATCCCTGAAGTCCCTGGTTCTCTCCCCTCAAGCCAT---AAGTATGACTTGTCT 236581865 Query 108384 GACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATG 108443 ||||||| ||| |||| ||| | ||||||||||| ||| ||| || ||||| || Sbjct 236581866 GACATGAATGCTGTCGCTAGGTTTGTCAAGTGGCAATACTTCGAAGGCGATGTTTCCAAT 236581925 Query 108444 GGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCC 108503 || ||||||||| |||| ||| |||| ||||| | | | | ||| | | || | Sbjct 236581926 GGCGCGCCTTATCCACCGTGCAGTGGAGTCCATGTGCGCTCTGTGTGCGTCTTTGGAGTT 236581985 Query 108504 GGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGG 108563 || ||| || |||||| || | || || ||| | || || || ||||||||| | Sbjct 236581986 GGTGACTTGAGCTGGATGCTGCGCAAACACCACTTTTTTGCCAATAAGTTTGACATGGAT 236582045 Query 108564 GTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCC 108614 |||||| | ||| ||||| || ||||| | || | ||||| ||| Sbjct 236582046 GTGGATCCCTTTGCCCTCCAGTGTTTGGAAGAACATCTGAGGCATAAAGCC 236582096 >seq271 Length=90843779 Score = 113 bits (124), Expect = 3e-20 Identities = 256/378 (68%), Gaps = 8/378 (2%) Strand=Plus/Minus Query 107698 AAGAAGA-GCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAAC 107756 ||||||| ||| ||||| ||| | |||||| |||||| || | | | | || | | Sbjct 21676735 AAGAAGAAGCT-GACTTTCCCTTGGCCTACGTCATGGTGATCTACAAAGACTTCGACACC 21676677 Query 107757 TTTGAACGGCTGCTGCGAGCCGTGTA--TGCCCCTCAGAACATATACTGTGTCCACGTGG 107814 |||||| |||| | | ||| | || |||||| ||||| | |||||||| ||||||| Sbjct 21676676 TTTGAAAGGCTCTTCAGGGCCATTTACATGCCCC--AGAACGTCTACTGTGTGCACGTGG 21676619 Query 107815 ATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTC-CTGCTTCCCC 107873 | ||| | ||||||| |||||||| ||||| | ||| ||| | ||| |||||| Sbjct 21676618 ACAGTAAGGCGGCAGAGACCTTCAAAGAAGCGGTGA-GGCATTTACTGAGCTGTTTCCCC 21676560 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAA 107933 |||| |||| |||| || | ||| | |||||| |||| || ||| | | || Sbjct 21676559 AATGCCTTCCTGGCTTCTAGGATGGAGCGGGTGGTCTATGGTGGCTTCTCCCGGCTCCAG 21676500 Query 107934 GCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTG 107993 |||||||||||||| ||| ||| || | | ||| || ||||| || | | Sbjct 21676499 GCTGACCTGAACTGCATGAGAGATCTGGTGGCTTCCAAAGTCCCCTGGAAATATGTCATC 21676440 Query 107994 AATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAG 108053 || || |||||| |||||||| | || ||||| || || || | | ||| || Sbjct 21676439 AACACCTGCGGGCAGGACTTCCCTCTGAAAACCAACAAAGAAATAGTTCAGTACCTGAAA 21676380 Query 108054 ATGTTGAAGGGTAAGAAC 108071 ||| ||||| || ||| Sbjct 21676379 GGGTTTAAGGGGAAAAAC 21676362 Score = 100 bits (110), Expect = 2e-16 Identities = 173/248 (70%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841 ||||||| ||||| | |||||||| |||||||| ||| | ||||||| ||||||| Sbjct 21739060 ATGCCCC--AGAACGTCTACTGTGTGCACGTGGACAGTAAGGCGGCAGAGACCTTCAAAG 21739003 Query 107842 AGGCGGTCAAGGCCATTATTTC-CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 | ||||| | ||| ||| | ||| |||||||||| |||| ||||| || | ||| Sbjct 21739002 AAGCGGTGA-GGCAGTTACTGAGCTGTTTCCCCAATGCCTTCCTGGCCTCTAGGATGGAG 21738944 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 | |||||| |||| || ||| | | || |||||||||||||| ||| ||| || Sbjct 21738943 CGGGTGGTCTATGGTGGCTTCTCCCGGCTCCAGGCTGACCTGAACTGCATGAGAGATCTG 21738884 Query 107961 CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020 | | ||| || ||||| || | | || || |||||| |||||||| | Sbjct 21738883 GTGGCTTCCAAAGTCCCCTGGAAATATGTCATCAACACCTGCGGGCAGGACTTCCCTCTG 21738824 Query 108021 AAGACCAA 108028 || ||||| Sbjct 21738823 AAAACCAA 21738816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348264746477670