Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq166 96.9 3e-15 >seq166 Length=122095297 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | || | ||||| ||||||| || ||| || || |||||||| || | || Sbjct 121921697 AGATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTTTATGTGGTGAA 121921638 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | || |||| || || | || || || || | |||||||| |||||||| || || Sbjct 121921637 TGGGGAGCTGTCTTGCCAGCTTTACCAGCGGTCAGGAGATATGGGTCTGGGTGTGCCCTT 121921578 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 ||| ||||| || ||||| ||||| || || |||||||||||| Sbjct 121921577 CAACATTGCCAGCTATGCTCTGCTGACCTACATGATTGCACAT 121921535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399179353872475