Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq297 279 5e-70 >seq297 Length=62275575 Score = 279 bits (308), Expect = 5e-70 Identities = 608/901 (67%), Gaps = 16/901 (2%) Strand=Plus/Minus Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954 || || || || ||||| | || || || | |||| || ||||||||||| ||||| Sbjct 25392883 TTTGACATTACTCCCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTT 25392824 Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCA 14014 ||||| ||||| ||||| ||||| || |||||||||||| | | || | || | | Sbjct 25392823 CCTTCTAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGTTA 25392764 Query 14015 CAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCA 14074 |||| || || | | | || || || | ||||| || || || ||| || Sbjct 25392763 AAACCCAGCTCCAGCATAAGCCTGTCGGCCACAAACTCGATGTACTGCTTCATCAAGGTG 25392704 Query 14075 CAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGAC 14134 |||||||| || || || || ||||| | | || | || || | ||||| Sbjct 25392703 CAATTCATCCCGATGAGCTTCACAGGCAGGGCCTCTGTGAGGAACTCCTGCTCTATCCTG 25392644 Query 14135 ACAGCCTCGTTTATAATAATCGTAATAATTTCA--TTAGAAGGAGGATATTTTAGATGTT 14192 || || | | | || || || | || | || | || || | | || || | Sbjct 25392643 ACCGCGTTGGTAATTATT-TCTTT-TACTCTCTGCTCCGAGGGCTTGTGTACCAGGTGCT 25392586 Query 14193 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 14252 | || || | || ||||| ||||| || || ||||||||||| ||||||||||| || | Sbjct 25392585 TGAACATCAGGCAGGCAAAGTCACAGTGCAGACCCTCATCTCTGCTAATAAGTTCATTGG 25392526 Query 14253 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATC 14312 ||||||| | || ||||||| ||| ||||| || | ||| ||||||| || || || | Sbjct 25392525 AAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAAC 25392466 Query 14313 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT 14372 | |||||||| ||||| || || ||||| || || | | |||||||||| ||| || | Sbjct 25392465 CAGAAAAGAAGATTCCTTCTACCGCAGCGAAGGCCACAACTCGTTCTCCATACGTAGCCT 25392406 Query 14373 TTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14432 ||||| | ||||| ||||| |||| || || || | | || |||||| | Sbjct 25392405 CTTTGTCCCCAATCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTCT 25392346 Query 14433 CAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTA 14492 |||| || || || | || ||| | ||||| | | | |||||| || |||||||| | Sbjct 25392345 CAATGGCGTTGAAGAGATATTCTCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGA 25392286 Query 14493 AGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAG 14552 || |||||||| ||||||||||| ||||| || || || || ||||| ||||| | | Sbjct 25392285 GACTGTACATTTCGGAGTGTATGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGG 25392226 Query 14553 CTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14612 | |||| ||| || ||| | ||||| || |||| || ||||| ||||| |||| Sbjct 25392225 CCTCTGTGACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCAT 25392166 Query 14613 CACTAGCTGCAAAAAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTC--ATTGCTG 14668 |||| || ||||| || ||| || ||| | ||||| | | ||| || || | | Sbjct 25392165 CACTCGCCGCAAAGAAGGCCAGAACATGAGAT--ATAAAATGTCTCTCATCTGGTTTCAG 25392108 Query 14669 AGTTTTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14726 || || ||| | ||| | |||||| ||||| || || || || | |||||||| Sbjct 25392107 AG--CTTCCCAGT--GCTGAATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGG 25392052 Query 14727 TAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAA 14786 || ||||||| || ||||| ||| || || | ||| || ||||| || || | Sbjct 25392051 AGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATGGTATTCGATGGGAAAGACAACGA 25391992 Query 14787 A 14787 | Sbjct 25391991 A 25391991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482339841999400