Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq297 149 1e-30 seq166 91.5 3e-13 seq117 91.5 3e-13 >seq297 Length=62275575 Score = 149 bits (164), Expect = 1e-30 Identities = 303/447 (68%), Gaps = 5/447 (1%) Strand=Plus/Plus Query 101909 GAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCC 101968 |||| | |||| ||||| ||||| || ||||||||||||||| |||| | || ||||| Sbjct 25392420 GAACGAGTTGTGGCCTTCGCTGCGGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCA 25392479 Query 101969 ATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028 || |||||| ||||||| |||| | |||| || || || | |||||||| | ||| Sbjct 25392480 ATATTCTGGCTCAAGAAACGGGGACTGATGCCGGGCCTTACATTTTCCAATGAACTTATT 25392539 Query 102029 TCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTT 102088 || || || ||||| || | |||||||| ||| || |||| ||| | || Sbjct 25392540 AGCAGAGATGAGGGTCTGCACTGTGACTTTGCCTGCCTGATGTT---CAAGCACCTGGTA 25392596 Query 102089 GATACCCCATCAAGAG-AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACA 102147 | | || || ||| | || | ||||| | || | || ||| | || || || Sbjct 25392597 CACAAGCCCTC-GGAGCAGAGAGTAAAAGAAATAATTACCAACGCGGTCAGGATAGAGCA 25392655 Query 102148 AGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAG 102207 || || ||||||| |||||||||| || | | || ||||| |||| ||||||| Sbjct 25392656 GGAGTTCCTCACAGAGGCCCTGCCTGTGAAGCTCATCGGGATGAATTGCACCTTGATGAA 25392715 Query 102208 CCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTA 102267 |||||||| || |||||||| || | || || | || |||| | | ||| | Sbjct 25392716 GCAGTACATCGAGTTTGTGGCCGACAGGCTTATGCTGGAGCTGGGTTTTAACAAGATTTT 25392775 Query 102268 TAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTT 102327 || || || || || |||||||| |||||||| || || || || ||||| Sbjct 25392776 CAAAGTAGAAAATCCATTTGACTTCATGGAGAATATTTCACTAGAAGGAAAAACAAACTT 25392835 Query 102328 TTTTGAAAAGAGAGTCGCCGAGTATCA 102354 ||||| ||| |||| | |||||| || Sbjct 25392836 CTTTGAGAAGCGAGTAGGCGAGTACCA 25392862 >seq166 Length=122095297 Score = 91.5 bits (100), Expect = 3e-13 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 35567 GATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCT--CAATTTTATGTGGCTA 35624 ||||||| ||| ||||| || ||||| ||||| || | || ||||||||||||| | Sbjct 121921696 GATCTTCCCCTGATGGCACTGCCTCCTTGCCA--TGCCCTCTGTCAATTTTATGTGGTGA 121921639 Query 35625 ATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCT 35684 |||| || |||| |||||| | || ||||| |||||| | || |||| ||||||| Sbjct 121921638 ATGGGGAGCTGTCTTGCCAGCTTTACCAGCGGTCAGGAGATATGGGTCTGGGTGTGCCCT 121921579 Query 35685 TCAATATTGCATCATACTCTCTTCTGAC 35712 |||| ||||| || |||| ||||| Sbjct 121921578 TCAACATTGCCAGCTATGCTCTGCTGAC 121921551 >seq117 Length=147991367 Score = 91.5 bits (100), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 101909 GAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCC 101968 |||| | |||| ||||| ||||| || ||||||||||||||| |||| | || ||||| Sbjct 43887647 GAACGAGTTGTGGCCTTCGCTGCGGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCA 43887706 Query 101969 ATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028 || |||||| ||||||| |||| | |||| || || || | ||||||||| | ||| Sbjct 43887707 ATATTCTGGCTCAAGAAACGGGGACTGATGCCGGGCCTTACATTTTCCAATGAGCTTATT 43887766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989571891512025