Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq232 538 4e-148 seq297 432 5e-116 seq1 125 9e-24 seq129 107 2e-18 seq117 105 8e-18 >seq232 Length=115493446 Score = 538 bits (596), Expect = 4e-148 Identities = 1473/2243 (66%), Gaps = 49/2243 (2%) Strand=Plus/Minus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 ||||| || ||||| || || ||| |||||| | || | || ||| ||||| | Sbjct 76911775 CTTGTTCAGAGTGAAGTGGATTGGATTAACAGCGGGTCTTGTCCTTAAATAATACATCCG 76911716 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 || |||| ||| | |||| || ||||| |||||||| ||||||||| || | || Sbjct 76911715 AGTCTTTAAACCCTGCTTCCAACCATAAAAGTGCATACTAGTTAGTTTGCCGTAGTTGGG 76911656 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 || || |||||||| || | ||| || ||||||| || ||| | || || || || || Sbjct 76911655 CTCAGCAATATGGATGTTTAAAGACTGGCTTTGATTGACGAAAACGCCTCTCTCAGCTGC 76911596 Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATC 62275 ||| || | | ||||| || | |||||||| || || ||| | | | |||| | | Sbjct 76911595 CATCTTGAGAACAGTCTTCTGAGAGATTTCCCACATGGTCTTACAGAGTTGCTTCAGGTT 76911536 Query 62276 TTCTGGAAGGTTTG-TAT--TCTGAATGGATCCACCATCTACCATAATCCTATTCTTGAT 62332 || |||| | || || |||||||||| ||| | | ||| ||| || || Sbjct 76911535 ATCAGGAATTTCTGGTAAGCTCTGAATGGAGCCATTGCAGGCAGTGATCTGATTTTTCAT 76911476 Query 62333 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTG 62392 ||| |||||||| || ||| || | | || | || | | || || || | || Sbjct 76911475 CTCTTCATTCCACAAACCCTGCTCAGTAAGATCTTTCAGTAAGCGAGGATTCACAATCTG 76911416 Query 62393 GAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62452 |||||||| ||||| ||||| | |||||| || ||||||| || | || | |||| Sbjct 76911415 AAATTCTCCTGACAAGACTCTGCAAGTGTAGATGCTACTGGTGTAAGCCTCAATGGACTG 76911356 Query 62453 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62512 |||||| | || ||| ||||||||| | ||||| ||||| || || | | |||||| || Sbjct 76911355 ATTATTCCTCAGAATCTGAGCAGTTAAAGCAGTAGGCATTGGGGCAATAAGTAAACTGTT 76911296 Query 62513 TCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG 62572 ||| | |||||| || || || | || ||| | | ||| | ||| || || | || Sbjct 76911295 TCTTATACCGTACTTTGCAATCTTCCCCTTGAGAAGCTTCCAGTCCCACAGGTCTGTAGG 76911236 Query 62573 TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGT 62632 | |||| ||| || |||||||| || ||| | ||||| |||| || Sbjct 76911235 AATAACATTCCACATATCATACTGAAGAATACCTTTGCTGACTGGAGATCCCTCATACGT 76911176 Query 62633 ATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAAT 62692 | | || || | | || ||||| | ||| || || || | || || |||||||| Sbjct 76911175 TTTGTCGGGGCCATATTCCTTGGCTAGGTCACAGCTGGCTTCCAGGGCTCCATAATAAAT 76911116 Query 62693 GGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAA 62752 |||||||||||| | |||||||| || ||||| ||||| ||| Sbjct 76911115 GGTTTCAAAGATTTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA-------------- 76911070 Query 62753 GAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62812 | || || || || |||| ||||| || ||||| || || || | ||| ||||| Sbjct 76911069 --GGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGTGTTTATT 76911012 Query 62813 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 62872 || | | || ||||||||||| || || || ||||| || |||||||| ||||| Sbjct 76911011 TGATAAGTGTGCCTCTGGAATAGGGTAGTAGTTTATATCAATTATTTTATTCGGATTTTG 76910952 Query 62873 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT---AC 62929 |||||| ||||| || || |||||| ||| ||| | ||| | || Sbjct 76910951 GACAATGACTTTAGTGACTTCTGCCAGTTTCTCAAAGTCATACGTATGTTCTGGTGTGAC 76910892 Query 62930 AAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCG--CA 62987 ||||||| | || | ||| |||| ||||| | || ||||||| || | || Sbjct 76910891 CTACATGTTGAGAGCCAGAGAAGCCAAGTTACAAATTGCAACCTCATCTTCACTGGTGCA 76910832 Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 | |||||| || || || | || || ||||| ||||| | || ||||| | Sbjct 76910831 ACTC----TATCTCCGTACACAGGTGGCTGCATTTGATGGTTCCCAGGTTCTGTTGGCTG 76910776 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 ||||| || ||| || || || || ||| |||| ||||| || || |||||| Sbjct 76910775 CTCTTCGGGTCACAGAAGTCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGCCTGAGAC 76910716 Query 63108 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCT-C 63165 | || || || | ||| | | || || | ||| | | ||| | | || | Sbjct 76910715 CCAATGATGGCGTACCAAAGCTGCT-GAACTTTTCACA-ACTTTTCAGACACGACCCTGC 76910658 Query 63166 TT-TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGA 63224 || ||||| ||| || |||||||| |||||| |||| | ||||| | |||| Sbjct 76910657 TTCTCGTAACTTTCATATAACTTCTCGAACTCCTCTCCCTAAACCTCGTCCAGACCAGGA 76910598 Query 63225 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63284 || |||| |||||||||| |||| || || | || ||||| ||||| |||||| Sbjct 76910597 CACTCATTGGGACACATCAGTGACCGGTCCTGGTTAGTCTCTACTCGCTTCATGAAGAGA 76910538 Query 63285 TCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTC 63344 | || |||| ||| || | || ||||| | | | ||||| || || ||||| ||| Sbjct 76910537 TTTGGGATCCGAAGTGCGAAGAAGAGATCCCACGCTTGCTGTTCTTCCTTGCCTGTGTTC 76910478 Query 63345 TTTTTAAGATCGAGGAACGCCATAATATC-AGAA------TGCCACGGTTCCAAGTATAT 63397 || || | || |||||| | | || || || ||||| || | || ||| || Sbjct 76910477 TTCTTCAAGTCAAGGAACTCAAAGATGTCTAGGTGGTTGGTGCCAAGGCTTCAGGTAAAT 76910418 Query 63398 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63457 || | | || || || |||||||| || ||||| | ||| | ||| ||||| |||| Sbjct 76910417 AGCAAATGCCCCCGGGCGCTTGTTTCCACCTTGATCCACGTAAC-AGCTGTGTTGTTATG 76910359 Query 63458 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCC 63517 ||||||| | ||| | || || || || | | || || || | || |||| || Sbjct 76910358 TACTCTCAGCGTTGACACAAGACAATTAGAATTGCTGTTAGTCCCAGCAATGTAGCTACC 76910299 Query 63518 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63577 | |||| |||||| | | | | | || |||||||| || ||||| || || | Sbjct 76910298 AATGGCCCGAATACAATTCACGCA-ACACTGATTCCCCCAGCAGACTTAGAAATCAAGGA 76910240 Query 63578 GCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA 63637 | | || | || ||||| || || || ||||| ||| | |||| | | || || Sbjct 76910239 ATACTGCTTCAGAGTATCATAAATTCCCTCAATGCTGTCACCTTTCATACTCAAGAGGAA 76910180 Query 63638 ACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63697 ||||| ||||| || | | ||| || || ||||| || | | ||||| || || || Sbjct 76910179 ACAGCGAGACAGCTGTGGGC-AGTGGTCCCAGCATTGAAGAGAATCGGAGAGGCTTGAGT 76910121 Query 63698 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63757 ||| || || ||||||||||||||||| || ||||| || | || ||||| || || Sbjct 76910120 AAATCACTTCTCAGAAAGTAGATTGTATGTTTCAATTGCAGCATCAATATCTTCTTTGTG 76910061 Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT 63817 ||| || || | || | ||| ||||| ||||| |||| |||| | | ||| | || Sbjct 76910060 AATCCCCACAGATACCCTCATCAACATATGCTGCGGTCGTTCAGCCACTTTTCCACTGAT 76910001 Query 63818 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63877 |||||||| || || ||||| || ||||||||||| |||||||| || | | Sbjct 76910000 CTTCAACAAATATGACCGTTCCAGTGTCTTAAAACCAAAGTAGTTGTAAACGAAATTCCA 76909941 Query 63878 TTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCA-TGGTAA 63936 || || ||||| | ||||| || | ||| |||| |||| || || | || | | Sbjct 76909940 GTCATAGATAATGGCAGAATTCAGGTGATCTTTATTAGCCATAACAATGTCAAGTGCTGA 76909881 Query 63937 TACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCT 63996 ||| | | || ||||||| | | | || | ||||| | |||||| | | ||||| Sbjct 76909880 -ACTGGCCACCATGGGAGAATATCTGCTGTTGTGTGGATTCATGTAGTTGTAGAGATCCT 76909822 Query 63997 CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGG 64056 ||||| | || | || | ||| |||||||| ||||| | || || | || || || | Sbjct 76909821 CCATCCCATCGCCGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTTG 76909762 Query 64057 CGGCTAGAATGGCATAATCCGGATG--TTGTGTAGTA--CAAGTGGCTGCTATTTCGGCT 64112 | || || |||||||| || || || | | | ||| || ||||| ||| | || || Sbjct 76909761 CTGCCAGGATGGCATAGTCAGGGTGCTTCGCTTCGTAGTCAGGTGGCAGCTGTCTCAGCA 76909702 Query 64113 GCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATA 64172 ||||| ||||||| ||| || || || || ||| | | || ||||| | || ||||| Sbjct 76909701 GCCAGGGTGTCCAGTTCCACTGTGGTGACCCCACTGTGTAGGCCTTGGCTTACTTTCATG 76909642 Query 64173 GCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGA 64232 | || | | |||| | | | ||| | || | ||||| || | ||| || || Sbjct 76909641 GTGATCTGAGCAGGAGCAACAAAGTCCATATTGAGCCCATAACAGAGTTTCTGGATTCGT 76909582 Query 64233 GACGTGATTTTATCAAACATGAC 64255 || || ||||| |||||||| || Sbjct 76909581 GATGTAATTTTGTCAAACATAAC 76909559 >seq297 Length=62275575 Score = 432 bits (478), Expect = 5e-116 Identities = 657/928 (71%), Gaps = 13/928 (1%) Strand=Plus/Minus Query 33236 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCT--TGAGACATAACTCCCATTTT 33292 ||| |||||| |||| || | ||| ||| ||| || | ||||| |||||||| | Sbjct 25392923 TTAGAAGTCAGCATCCAAGGTGAAAGAATTTTCTGTCGAATTTGACATTACTCCCATCCT 25392864 Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 ||||| || || || || || || || || || ||||||||||| | ||| ||||| || Sbjct 25392863 CTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTTCCTTCTAGTGAAATATTCTC 25392804 Query 33353 CATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAA 33412 |||||| ||||| ||||| || ||| |||| || ||||| |||| || || | Sbjct 25392803 CATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGTTAAAACCCAGCTCCAGCATAAG 25392744 Query 33413 TCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 33472 || || || || || || || || ||||||| |||||||| || ||||| || Sbjct 25392743 CCTGTCGGCCACAAACTCGATGTACTGCTTCATCAAGGTGCAATTCATCCCGATGAGCTT 25392684 Query 33473 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAA 33532 || || || ||| | || || || || || || || ||||| || || || || Sbjct 25392683 CACAGGCAGGGCCTCTGTGAGGAACTCCTGCTCTATCCTGACCGCGTTGGTAATTATTTC 25392624 Query 33533 TCTAACGGTTTCTTCACTCGGTGGAT---GTAATAAATGTTTAAACATCAAACATGCGAA 33589 | | || | ||| | | || || | ||| | || || ||||||| || || || Sbjct 25392623 TTTTAC--TCTCTGCTC-CGAGGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAA 25392567 Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649 || |||||||||||||| ||||| ||||| | ||| || ||||| || || || ||||| Sbjct 25392566 GTCACAGTGCAGACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTAAGGCCCGGCAT 25392507 Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709 || || || || || ||||| ||||| || || || || || ||||||||||||||||| Sbjct 25392506 CAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTC 25392447 Query 33710 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTT 33766 ||| ||||| ||||| | || || |||||||| | | | |||| ||||| Sbjct 25392446 TACCGCAGCGAAGGCCACAACTCGTTCTCCATACGTAGCCTCTTTGTCCCCAATCCAACG 25392387 Query 33767 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 ||||| || |||||||| || ||||||||||| || || ||||| || |||||||| Sbjct 25392386 CAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTCTCAATGGCGTTGAAGAGATA 25392327 Query 33827 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33886 | | |||| || |||||||| ||||| || || | ||||| |||||||| || || Sbjct 25392326 TTCTCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCGGAGTG 25392267 Query 33887 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||||| || ||||| || || || || |||||||| | ||||| || | || ||||| Sbjct 25392266 TATGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAACTTC 25392207 Query 33947 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGC 34006 | | |||||| || | || || ||||| ||||| |||||||| || ||||| || || Sbjct 25392206 TTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCCGCAAAGAAGGC 25392147 Query 34007 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 34066 || ||||| |||||||| | | || |||||| | || | ||| | | ||||| Sbjct 25392146 CAGAACATGAGATATAAAATGTCTCTCATCTGGTTTCAGAGCTTCCCAGTGCTGAATATC 25392087 Query 34067 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 34126 || || | ||||| || || | |||||||| || ||||| || || || ||||| | Sbjct 25392086 CTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTG 25392027 Query 34127 CCAGATGTCATGATATTGGATTGGGAAA 34154 |||||| ||||| |||| || ||||||| Sbjct 25392026 CCAGATATCATGGTATTCGA-TGGGAAA 25392000 >seq1 Length=282763074 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| || |||||||| || || || | Sbjct 167557814 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTGTAAGGCTCAATG 167557755 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 167557754 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 167557695 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | |||||| Sbjct 167557694 CTGTTTCTTATACCGTA 167557678 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| || | || ||||| ||||| |||||||| || ||||||||||||||| Sbjct 167546974 GTCCCAGCATTGAAGAGAGTCGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGTAGATTG 167546915 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || || ||||| || | || ||||| || ||||| || || | || | ||| ||| Sbjct 167546914 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 167546855 Query 63783 ATGTGCTGAGGTCTTTCA 63800 |||||||| ||||||||| Sbjct 167546854 ATGTGCTGTGGTCTTTCA 167546837 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678 ||||| |||| || || || || || | || || ||||| | ||| || || || | Sbjct 167554676 GATCCCTCATACGTTTCGTAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAGG 167554617 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 || || ||||| |||||||||||||| | ||||||||| || ||||| ||||| ||| Sbjct 167554616 GCTCCATAATAGATGGTTTCAAAGATTTGCTTATTTAGTAGCTGGGCTTCTGGGCTCTCA 167554557 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 || ||||| | | || || || || || |||| ||||| || ||||| || || || Sbjct 167554556 AAGGGATACCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGC 167554497 Query 62799 CTATGTCTCTTATTAGA 62815 | ||| | ||||| || Sbjct 167554496 CGATGGCGTTTATTTGA 167554480 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| || | ||| |||||||||||||| | || || | || || || || || || | Sbjct 167542545 CACTGAACACTTTCTTTGTTTCCTTGTGCAAGTTAGAGACAGCGATCCTTGCTGCCAGGA 167542486 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 ||||||| || || || | ||||| | ||||| ||| | || || ||||| ||||||| Sbjct 167542485 TGGCATAGTCAGGGTGCTTCGTAGTCAAGGTGGCAGCTGTCTCAGCAGCCAGGGTGTCCA 167542426 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 ||| || || || || ||| | |||| ||||| || || ||||| Sbjct 167542425 GTTCCACTGTGGTGACCCCACTGTATAGGCCTTGGATTACTTTCAT 167542380 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 167560806 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTGGGCTCAGCGATATGGATGT 167560747 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 167560746 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 167560687 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 167560686 TCTGAGAGATTTCCCACACGGTCTTATAGAGCTGCTTCAGGTCCTCAGGAA 167560636 >seq129 Length=145729302 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| || | | ||| | || || || || ||||| ||||||| ||| Sbjct 65000379 GTTACTTTCTATGATGGGCATCTGGTTCTGCATGCGTTTATACTGACTGCTGCAGTCTTT 65000438 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| ||||| | | ||||||||||||||||||||||||||| ||| | | | |||| Sbjct 65000439 CTTGGCTTGACTGCCTATACTCTACAATCAAAGAGAGATTTCAGCAAATTCGGAGCAGG 65000497 Score = 89.7 bits (98), Expect = 6e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 188173 GCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACA 188232 |||| ||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||| Sbjct 64987953 GCTCTTCCATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCGTCGGCCAGCGTGCACA 64988012 Query 188233 TACGAATGG 188241 | || |||| Sbjct 64988013 TTCGCATGG 64988021 >seq117 Length=147991367 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | || || ||||| || || || ||||| || || || || | Sbjct 43887779 CCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCT 43887720 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || |||||||||||||||||||| ||||| |||| Sbjct 43887719 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACCGCAGCGAAGG 43887660 Query 33724 CAATAAGTCTCTCTCC 33739 | | || || ||||| Sbjct 43887659 CCACAACTCGTTCTCC 43887644 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 33236 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCT--TGAGACATAACTCCCATTTT 33292 ||| |||||| |||| || | ||| ||| ||| || | ||||| |||||||| | Sbjct 43889515 TTAGAAGTCAGCATCCAAGGTGAAAGAATTTTCTGTCGAATTTGACATTACTCCCATCCT 43889456 Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 ||||| || || || || || || || || || ||||||||||| | ||| ||||| || Sbjct 43889455 CTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTTCCTTCTAGTGAAATATTCTC 43889396 Query 33353 CATGAAATCAAACGGATT 33370 |||||| ||||| ||||| Sbjct 43889395 CATGAAGTCAAATGGATT 43889378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810081552400