Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq166 118 9e-22 seq80 82.4 7e-11 >seq166 Length=122095297 Score = 118 bits (130), Expect = 9e-22 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 ||||||||||| || || |||| || ||||| || || |||||||| ||||| || || Sbjct 121921523 CAGGCCCGTGATATGTGCAATCATGTAGGTCAGCAGAGCATAGCTGGCAATGTTGAAGGG 121921582 Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC 21109 || || || ||||| || | |||| |||||| |||||||| ||||||||||| | Sbjct 121921583 CACACCCAGACCCATATCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCAC 121921642 Query 21110 CACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||| ||||| ||||| | | || |||||||| || |||||| Sbjct 121921643 CACATAAAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATC 121921685 >seq80 Length=184226339 Score = 82.4 bits (90), Expect = 7e-11 Identities = 133/191 (70%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 2970 CATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGC 3029 |||| || || || | || ||||| || ||||| || |||||||| |||| | Sbjct 3087506 CATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGTGGTTCCTTGAATTA----C 3087561 Query 3030 TCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATG 3089 | | || ||||||||||| | | | ||| | || || ||||| ||||| ||||| | Sbjct 3087562 TGAGAACTATATTAATTCTATCCTTTAAAGGTTGATTTTTCTCAGGAATGGAGAACCAGG 3087621 Query 3090 TTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTT 3149 || | | |||||||| |||| ||||| || |||| | || || | || | |||||| Sbjct 3087622 TTTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTC 3087681 Query 3150 TCTGAAAATAC 3160 |||| || ||| Sbjct 3087682 TCTGGAAGTAC 3087692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427771021088400